Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081343

Identifier: 99081343

GI number: 99081343

Start: 1609074

End: 1609340

Strand: Reverse

Name: 99081343

Synonym: TM1040_1502

Alternate gene names: NA

Gene position: 1609340-1609074 (Counterclockwise)

Preceding gene: 99081345

Following gene: 99081342

Centisome position: 50.28

GC content: 55.81

Gene sequence:

>267_bases
ATGGACATGACCGAAGATGAAAAGAGTGAAAACTACCGCGTGACGGCTGGCGAACTGCGTCAGTTTGTCGAACGGTTCGA
GCGTCTGGACGAAGAGAAAAAGGCGATCGCCGAGCAACAGAAAGAGGTCATGGCCGAAGCCAAGGGGCGCGGGTATGACG
TCAAGGTTCTGCGCAAGATCATCGCCCTGCGCAAGCGCGACGAAAACGACATCGCCGAAGAAGAGGCGGTTCTCGAGATG
TACAAAGAGGCGCTTGGCATGTCCTGA

Upstream 100 bases:

>100_bases
GGCGAACTCCAGTCTTGCGAGGCGTGCAGCAGCCCTGTATCCCTCTGCCTCAACCGGGTTCAACCGGAGCAGTTGAGGCA
ATTTGCACGAGGGCCATCCC

Downstream 100 bases:

>100_bases
TCGGGGCATTTCAGTGTGGTTTTGGAACGGGGATCTGGGGCAACTCAGATCCCCGTTTTGCGTCTGAAGCCCCCGGTTCG
CTCTCATCTTGCAACAATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MDMTEDEKSENYRVTAGELRQFVERFERLDEEKKAIAEQQKEVMAEAKGRGYDVKVLRKIIALRKRDENDIAEEEAVLEM
YKEALGMS

Sequences:

>Translated_88_residues
MDMTEDEKSENYRVTAGELRQFVERFERLDEEKKAIAEQQKEVMAEAKGRGYDVKVLRKIIALRKRDENDIAEEEAVLEM
YKEALGMS
>Mature_88_residues
MDMTEDEKSENYRVTAGELRQFVERFERLDEEKKAIAEQQKEVMAEAKGRGYDVKVLRKIIALRKRDENDIAEEEAVLEM
YKEALGMS

Specific function: Unknown

COG id: COG3750

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0335 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018753 [H]

Pfam domain/function: PF10073 DUF2312 [H]

EC number: NA

Molecular weight: Translated: 10330; Mature: 10330

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMTEDEKSENYRVTAGELRQFVERFERLDEEKKAIAEQQKEVMAEAKGRGYDVKVLRKI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IALRKRDENDIAEEEAVLEMYKEALGMS
HHHHCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDMTEDEKSENYRVTAGELRQFVERFERLDEEKKAIAEQQKEVMAEAKGRGYDVKVLRKI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IALRKRDENDIAEEEAVLEMYKEALGMS
HHHHCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]