| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is dht [H]
Identifier: 99081338
GI number: 99081338
Start: 1602053
End: 1603507
Strand: Reverse
Name: dht [H]
Synonym: TM1040_1497
Alternate gene names: 99081338
Gene position: 1603507-1602053 (Counterclockwise)
Preceding gene: 99081339
Following gene: 99081337
Centisome position: 50.09
GC content: 59.93
Gene sequence:
>1455_bases ATGACGACAGTCATCAAGAACGGCACCATTGTGACCGCGGATCTAACCTATAAGGCGGATGTCCTGATCGAGGGCGGCGT CATCACCGAAATCGGCCCGGATCTGAAGGGCGATGAGGTGCTGGATGCCAGCGGTTGCTATGTCATGCCTGGCGGGATTG ATCCGCATACCCATCTGGAGATGCCGTTCATGGGCACCTATTCTTCGGATGATTTTGAAAGTGGCACCCGTGCCGGGCTT GCGGGCGGGACCACCATGGTGGTCGATTTTGCGCTTCCGCAGCCGGGTGAGAGCCTGCTCGATGCGCTCAAGCGCTGGGA CAACAAGTCGACTCGCGCCAATTGTGACTATTCCTTCCATATGGCGGTGACCTGGTGGGGCGAGCAGGTCTTTGATGAGA TGAAGACCGTCATCGAGACCCGGGGCATCAACACCTTCAAGCATTTCATGGCCTACAAGGGCGCCTTGATGGTGAATGAT GATGAGCTTTATGCGTCATTTCAGCGTCTTGCGGAGTTGGGTGGCATCGCCATGGTGCATGCCGAGAACGGCGATGTGGT GGCGGAGTTGAGTGCCAAGCTTTTGGCCGAGGGCAATACCGGCCCCGAAGCGCATGCTTATTCGCGCCCGCCGCAGGTGG AAGGCGAAGCCACCAACCGGGCGGTCATGATTGCGGATATGGCCGGTGTGCCGCTCTATGTGGTGCACACCTCCTGTGAA GAGAGCCACGAGGCCATTCGTCGGGCGCGCATGCTTGGCAAGCGGGTCTGGGGCGAGCCGCTCATCCAGCATCTGACACT GGATGAGAGCGAGTATTTCAACCCCGATTGGGATCACGCTGCGCGGCGCGTGATGTCGCCACCGTTTCGCAACAAACAGC ATCAGGACAGCCTCTGGGCGGGGCTTCAGTCCGGGTCCCTGTCGGTGGTCGCGACCGATCACTGCGCGTTCTCGACCGAG CAGAAAAGATACGGCGTGGGCGATTTCACCAAGATCCCCAACGGCACGGGCGGGCTTGAGGACCGGATGCCGATGCTCTG GACGCATGGTGTCGAAACTGGCCGCCTGACGCCCAATGAGTTTGTCGCGGTGACCTCGACCAATATTGCCAAGATCCTGA ACTGCTATCCCAAGAAGGGGGCTGTGCTTGTGGGGGCGGATGCAGATCTGGTGGTCTGGGATCCCAAGAAAACCAAGACG ATCTCTGCCGAGAGCCAGCAATCTGCCATTGATTACAACGTGTTCGAGGGCAAAGAGGTGAAGGGCCTGCCGCGCTACAC CCTGACCCGTGGACAGGTCGCCGTGATGGACGGTGAGATCAAGACCCAGGAAGGTCACGGCAAATTTGTGGAGCGCGCGC CCAACACCGTGGTGAACAAGGCGCTCAGCACCTGGAAAGAGCTGACCGCGCCGCGCCCGGTTGAGCGCAGCGGCATTCCC GCCACTGGCGTCTAA
Upstream 100 bases:
>100_bases GTTCCCGCGACTCCCCCGGGATATTTGGAGTTAGAAGAAACTCTGCCGGGAGCTCAATAACAAAACGGCGCAAAAGTCGC CGGACCACAGGGAGTTTGAT
Downstream 100 bases:
>100_bases ACGCATGAAAACGGGGGCCTCTGCGCCCCCGTTTGTTTGATCAAGGCTATGAAATGAATATGCAAATGACCTCAGAGGTA GAACAAGCCATCGATCGGGA
Product: phenylhydantoinase
Products: NA
Alternate protein names: DHPase [H]
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MTTVIKNGTIVTADLTYKADVLIEGGVITEIGPDLKGDEVLDASGCYVMPGGIDPHTHLEMPFMGTYSSDDFESGTRAGL AGGTTMVVDFALPQPGESLLDALKRWDNKSTRANCDYSFHMAVTWWGEQVFDEMKTVIETRGINTFKHFMAYKGALMVND DELYASFQRLAELGGIAMVHAENGDVVAELSAKLLAEGNTGPEAHAYSRPPQVEGEATNRAVMIADMAGVPLYVVHTSCE ESHEAIRRARMLGKRVWGEPLIQHLTLDESEYFNPDWDHAARRVMSPPFRNKQHQDSLWAGLQSGSLSVVATDHCAFSTE QKRYGVGDFTKIPNGTGGLEDRMPMLWTHGVETGRLTPNEFVAVTSTNIAKILNCYPKKGAVLVGADADLVVWDPKKTKT ISAESQQSAIDYNVFEGKEVKGLPRYTLTRGQVAVMDGEIKTQEGHGKFVERAPNTVVNKALSTWKELTAPRPVERSGIP ATGV
Sequences:
>Translated_484_residues MTTVIKNGTIVTADLTYKADVLIEGGVITEIGPDLKGDEVLDASGCYVMPGGIDPHTHLEMPFMGTYSSDDFESGTRAGL AGGTTMVVDFALPQPGESLLDALKRWDNKSTRANCDYSFHMAVTWWGEQVFDEMKTVIETRGINTFKHFMAYKGALMVND DELYASFQRLAELGGIAMVHAENGDVVAELSAKLLAEGNTGPEAHAYSRPPQVEGEATNRAVMIADMAGVPLYVVHTSCE ESHEAIRRARMLGKRVWGEPLIQHLTLDESEYFNPDWDHAARRVMSPPFRNKQHQDSLWAGLQSGSLSVVATDHCAFSTE QKRYGVGDFTKIPNGTGGLEDRMPMLWTHGVETGRLTPNEFVAVTSTNIAKILNCYPKKGAVLVGADADLVVWDPKKTKT ISAESQQSAIDYNVFEGKEVKGLPRYTLTRGQVAVMDGEIKTQEGHGKFVERAPNTVVNKALSTWKELTAPRPVERSGIP ATGV >Mature_483_residues TTVIKNGTIVTADLTYKADVLIEGGVITEIGPDLKGDEVLDASGCYVMPGGIDPHTHLEMPFMGTYSSDDFESGTRAGLA GGTTMVVDFALPQPGESLLDALKRWDNKSTRANCDYSFHMAVTWWGEQVFDEMKTVIETRGINTFKHFMAYKGALMVNDD ELYASFQRLAELGGIAMVHAENGDVVAELSAKLLAEGNTGPEAHAYSRPPQVEGEATNRAVMIADMAGVPLYVVHTSCEE SHEAIRRARMLGKRVWGEPLIQHLTLDESEYFNPDWDHAARRVMSPPFRNKQHQDSLWAGLQSGSLSVVATDHCAFSTEQ KRYGVGDFTKIPNGTGGLEDRMPMLWTHGVETGRLTPNEFVAVTSTNIAKILNCYPKKGAVLVGADADLVVWDPKKTKTI SAESQQSAIDYNVFEGKEVKGLPRYTLTRGQVAVMDGEIKTQEGHGKFVERAPNTVVNKALSTWKELTAPRPVERSGIPA TGV
Specific function: Catalyzes the hydrolysis of dihydropyrimidines and of the structurally related DL-5-mono-substituted hydantoins, to produce N-carbamoyl-D-amino acids [H]
COG id: COG0044
COG function: function code F; Dihydroorotase and related cyclic amidohydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DHOase family. Hydantoinase/dihydropyrimidinase subfamily [H]
Homologues:
Organism=Homo sapiens, GI4503375, Length=484, Percent_Identity=48.1404958677686, Blast_Score=470, Evalue=1e-132, Organism=Homo sapiens, GI4503379, Length=459, Percent_Identity=43.5729847494553, Blast_Score=408, Evalue=1e-114, Organism=Homo sapiens, GI190194363, Length=454, Percent_Identity=45.1541850220264, Blast_Score=405, Evalue=1e-113, Organism=Homo sapiens, GI4503377, Length=456, Percent_Identity=42.9824561403509, Blast_Score=405, Evalue=1e-113, Organism=Homo sapiens, GI4503051, Length=454, Percent_Identity=42.7312775330396, Blast_Score=399, Evalue=1e-111, Organism=Homo sapiens, GI62422571, Length=454, Percent_Identity=42.7312775330396, Blast_Score=398, Evalue=1e-111, Organism=Homo sapiens, GI19923821, Length=481, Percent_Identity=43.035343035343, Blast_Score=395, Evalue=1e-110, Organism=Homo sapiens, GI18105007, Length=274, Percent_Identity=27.007299270073, Blast_Score=75, Evalue=2e-13, Organism=Escherichia coli, GI87082175, Length=462, Percent_Identity=39.3939393939394, Blast_Score=332, Evalue=2e-92, Organism=Escherichia coli, GI1786722, Length=441, Percent_Identity=28.5714285714286, Blast_Score=167, Evalue=1e-42, Organism=Caenorhabditis elegans, GI17539558, Length=483, Percent_Identity=47.6190476190476, Blast_Score=457, Evalue=1e-129, Organism=Caenorhabditis elegans, GI71989490, Length=482, Percent_Identity=43.9834024896266, Blast_Score=425, Evalue=1e-119, Organism=Caenorhabditis elegans, GI86575075, Length=458, Percent_Identity=32.9694323144105, Blast_Score=255, Evalue=4e-68, Organism=Caenorhabditis elegans, GI193204318, Length=431, Percent_Identity=24.1299303944316, Blast_Score=89, Evalue=6e-18, Organism=Saccharomyces cerevisiae, GI6322218, Length=448, Percent_Identity=26.3392857142857, Blast_Score=118, Evalue=2e-27, Organism=Drosophila melanogaster, GI221377917, Length=455, Percent_Identity=45.2747252747253, Blast_Score=423, Evalue=1e-118, Organism=Drosophila melanogaster, GI17137462, Length=453, Percent_Identity=44.8123620309051, Blast_Score=414, Evalue=1e-116, Organism=Drosophila melanogaster, GI24644287, Length=294, Percent_Identity=44.8979591836735, Blast_Score=266, Evalue=2e-71, Organism=Drosophila melanogaster, GI24644289, Length=252, Percent_Identity=46.031746031746, Blast_Score=236, Evalue=2e-62, Organism=Drosophila melanogaster, GI24642586, Length=422, Percent_Identity=26.0663507109005, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI18859883, Length=420, Percent_Identity=23.0952380952381, Blast_Score=73, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 - InterPro: IPR011778 - InterPro: IPR011059 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: =3.5.2.2 [H]
Molecular weight: Translated: 52940; Mature: 52809
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTVIKNGTIVTADLTYKADVLIEGGVITEIGPDLKGDEVLDASGCYVMPGGIDPHTHLE CCEEEECCEEEEEEEEEEEEEEEECCEEEECCCCCCCCCEECCCCCEEECCCCCCCCEEC MPFMGTYSSDDFESGTRAGLAGGTTMVVDFALPQPGESLLDALKRWDNKSTRANCDYSFH CCEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEE MAVTWWGEQVFDEMKTVIETRGINTFKHFMAYKGALMVNDDELYASFQRLAELGGIAMVH EEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCEEEEE AENGDVVAELSAKLLAEGNTGPEAHAYSRPPQVEGEATNRAVMIADMAGVPLYVVHTSCE ECCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCH ESHEAIRRARMLGKRVWGEPLIQHLTLDESEYFNPDWDHAARRVMSPPFRNKQHQDSLWA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHH GLQSGSLSVVATDHCAFSTEQKRYGVGDFTKIPNGTGGLEDRMPMLWTHGVETGRLTPNE HCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC FVAVTSTNIAKILNCYPKKGAVLVGADADLVVWDPKKTKTISAESQQSAIDYNVFEGKEV EEEEECCCHHHHHHCCCCCCCEEEECCCCEEEECCCCCEEECCCCHHCCCCEEEECCCCC KGLPRYTLTRGQVAVMDGEIKTQEGHGKFVERAPNTVVNKALSTWKELTAPRPVERSGIP CCCCCEEECCCEEEEECCCEEECCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC ATGV CCCC >Mature Secondary Structure TTVIKNGTIVTADLTYKADVLIEGGVITEIGPDLKGDEVLDASGCYVMPGGIDPHTHLE CEEEECCEEEEEEEEEEEEEEEECCEEEECCCCCCCCCEECCCCCEEECCCCCCCCEEC MPFMGTYSSDDFESGTRAGLAGGTTMVVDFALPQPGESLLDALKRWDNKSTRANCDYSFH CCEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEE MAVTWWGEQVFDEMKTVIETRGINTFKHFMAYKGALMVNDDELYASFQRLAELGGIAMVH EEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCEEEEE AENGDVVAELSAKLLAEGNTGPEAHAYSRPPQVEGEATNRAVMIADMAGVPLYVVHTSCE ECCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCH ESHEAIRRARMLGKRVWGEPLIQHLTLDESEYFNPDWDHAARRVMSPPFRNKQHQDSLWA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHH GLQSGSLSVVATDHCAFSTEQKRYGVGDFTKIPNGTGGLEDRMPMLWTHGVETGRLTPNE HCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC FVAVTSTNIAKILNCYPKKGAVLVGADADLVVWDPKKTKTISAESQQSAIDYNVFEGKEV EEEEECCCHHHHHHCCCCCCCEEEECCCCEEEECCCCCEEECCCCHHCCCCEEEECCCCC KGLPRYTLTRGQVAVMDGEIKTQEGHGKFVERAPNTVVNKALSTWKELTAPRPVERSGIP CCCCCEEECCCEEEEECCCEEECCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC ATGV CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]