| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081318
Identifier: 99081318
GI number: 99081318
Start: 1577426
End: 1578394
Strand: Reverse
Name: 99081318
Synonym: TM1040_1477
Alternate gene names: NA
Gene position: 1578394-1577426 (Counterclockwise)
Preceding gene: 99081320
Following gene: 99081317
Centisome position: 49.31
GC content: 62.85
Gene sequence:
>969_bases ATGACCCTTTCCCGTAGAACTCTTTTGAAATCCGTGGGCCTTGCTGGTGCAGGTCTTGCTGTACCTTCTCTGGGCCAGAT GGCGCTGGCCGCACCAATGGCCCCTGCGCCTGTGCTGCATCAGTTCCGCCTTGGCGACGCCGTGATTACCGCGCTTCTTG ATGGGCATCTGTCGCTGCCATCTGGTATGTTCACCGGGGCCGATCCTGAAACCGTTGCGCAGACGCTTGCCGGGACCTTC TACCGCGAGGACGCGCAGGGGCTCGAGATCCCGGTCAACGGGTATCTTGTGGAGCGCGCAGGCCAGTACACCCTCATTGA CACCGGCACGGCTGCGCTGATGGGGCCGGAGCTTGGCGGGTTGATGGGGGCCCTCGCCGCGACAGGCGTGACGCCCGATC AGATCTCCACGATCTTGTTGACCCATATGCATCCGGATCACGCGGGTGGTCTTTTGAATGCGGACGGCAGCGCGGCCTTT CCCAATGCAGAGTTGGTGGTGGCCGACGCCGAGTGGGGGTTCTGGCACGACGATGCGATTATGGCCTCCGTCGACGAAGG CAGTCGCGGCTTCTTTCAGATGGCCCGCAATGCGGTAGCGCCGTATGCGGATCGGATGAAGCCGTTTAGTGGCGAGGCCG AGGTGGCGGCGGGCTTCAGCGCCATGCCATTGCCGGGACATACGCCGGGGCACAGTGGCTTTATGCTTGATGCAGGCTCC GAGCAGCTCTTGTTCTGGGGCGATGTGGTTCATAGCACCGCGCTTCAGTTCCGCAATCCTGACTGGACCATCCCCTTTGA TGCGGATCAGTCGCTGGCGGCCCAGACCCGCAAAGCGATGTTCGACCGCGCAGTTGCTGATCAGTTGCTGGTGACGGGCA TGCATCTGGATTTCCCCGGACTCGGACGGGTCGAACGCGACGGCGGGGCCTACGCCTTTGACCAGGCGCCCTGGCAATTC GGCCTCTGA
Upstream 100 bases:
>100_bases CTAATACCCCTTATTAGCTCTCCGGGACTGTAGAGTACCAGCGTTAAACTCTATCTCGCATTTGTCGGTGCTTTCGCTGA CTAGGATATTGGAGCCTCTT
Downstream 100 bases:
>100_bases CCAGGGGCTATCAGGCGTCGTTCCGCTGTCGATCTGGGGCGTAAATACGCGCCGTTTCGGCACCGGGGCGACATGCCCCT CCCTTTGCTGTGTCGCTCAG
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Metallo-Beta-Lactamase Superfamily Protein; Twin-Arginine Translocation Pathway Signal; Beta-Lactamase-Like; Zn-Dependent Hydrolase; Beta-Lactamase-Like Protein; Metal Dependent Hydrolase; Metallo-Beta-Lactamase; Beta-Lactamase; Hydrolase; Methyl Parathion Hydrolase; Beta-Lactamase Family Protein; Beta-Lactamase Superfamily Hydrolase; Metallo-Hydrolase Protein; Metallo-Beta-Lactamase Superfamily; Glyoxalase II; Zn-Dependent Beta-Lactamase Domain Hydrolase; Beta-Lactamase/Hydrolase; Metal-Dependent Hydrolase; Organophosphate Pesticide Hydrolase; Signal Peptide; Beta-Lactamase-Like Zn-Dependent Hydrolase Protein; Metallo-Beta-Lactamase Domain-Containing Protein; GloB Protein; Aldehyde Dehydrogenase; Metallo-Beta-Lactamase Family Methyl Parathion Hydrolase; Signal Peptide Protein; Metall Dependent Hydrolase; Zn-Dependent Hydrolase Including Glyoxylase
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MTLSRRTLLKSVGLAGAGLAVPSLGQMALAAPMAPAPVLHQFRLGDAVITALLDGHLSLPSGMFTGADPETVAQTLAGTF YREDAQGLEIPVNGYLVERAGQYTLIDTGTAALMGPELGGLMGALAATGVTPDQISTILLTHMHPDHAGGLLNADGSAAF PNAELVVADAEWGFWHDDAIMASVDEGSRGFFQMARNAVAPYADRMKPFSGEAEVAAGFSAMPLPGHTPGHSGFMLDAGS EQLLFWGDVVHSTALQFRNPDWTIPFDADQSLAAQTRKAMFDRAVADQLLVTGMHLDFPGLGRVERDGGAYAFDQAPWQF GL
Sequences:
>Translated_322_residues MTLSRRTLLKSVGLAGAGLAVPSLGQMALAAPMAPAPVLHQFRLGDAVITALLDGHLSLPSGMFTGADPETVAQTLAGTF YREDAQGLEIPVNGYLVERAGQYTLIDTGTAALMGPELGGLMGALAATGVTPDQISTILLTHMHPDHAGGLLNADGSAAF PNAELVVADAEWGFWHDDAIMASVDEGSRGFFQMARNAVAPYADRMKPFSGEAEVAAGFSAMPLPGHTPGHSGFMLDAGS EQLLFWGDVVHSTALQFRNPDWTIPFDADQSLAAQTRKAMFDRAVADQLLVTGMHLDFPGLGRVERDGGAYAFDQAPWQF GL >Mature_321_residues TLSRRTLLKSVGLAGAGLAVPSLGQMALAAPMAPAPVLHQFRLGDAVITALLDGHLSLPSGMFTGADPETVAQTLAGTFY REDAQGLEIPVNGYLVERAGQYTLIDTGTAALMGPELGGLMGALAATGVTPDQISTILLTHMHPDHAGGLLNADGSAAFP NAELVVADAEWGFWHDDAIMASVDEGSRGFFQMARNAVAPYADRMKPFSGEAEVAAGFSAMPLPGHTPGHSGFMLDAGSE QLLFWGDVVHSTALQFRNPDWTIPFDADQSLAAQTRKAMFDRAVADQLLVTGMHLDFPGLGRVERDGGAYAFDQAPWQFG L
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33907; Mature: 33776
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLSRRTLLKSVGLAGAGLAVPSLGQMALAAPMAPAPVLHQFRLGDAVITALLDGHLSLP CCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC SGMFTGADPETVAQTLAGTFYREDAQGLEIPVNGYLVERAGQYTLIDTGTAALMGPELGG CCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCEEEECCCCEEEEECCCCEEECCHHHH LMGALAATGVTPDQISTILLTHMHPDHAGGLLNADGSAAFPNAELVVADAEWGFWHDDAI HHHHHHHCCCCHHHHHEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEECCCE MASVDEGSRGFFQMARNAVAPYADRMKPFSGEAEVAAGFSAMPLPGHTPGHSGFMLDAGS EEECCCCCHHHHHHHHHHCCCHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEECCC EQLLFWGDVVHSTALQFRNPDWTIPFDADQSLAAQTRKAMFDRAVADQLLVTGMHLDFPG CEEEEEHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCEECCCCC LGRVERDGGAYAFDQAPWQFGL CCCEECCCCCEEECCCCCCCCC >Mature Secondary Structure TLSRRTLLKSVGLAGAGLAVPSLGQMALAAPMAPAPVLHQFRLGDAVITALLDGHLSLP CCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC SGMFTGADPETVAQTLAGTFYREDAQGLEIPVNGYLVERAGQYTLIDTGTAALMGPELGG CCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCEEEECCCCEEEEECCCCEEECCHHHH LMGALAATGVTPDQISTILLTHMHPDHAGGLLNADGSAAFPNAELVVADAEWGFWHDDAI HHHHHHHCCCCHHHHHEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEECCCE MASVDEGSRGFFQMARNAVAPYADRMKPFSGEAEVAAGFSAMPLPGHTPGHSGFMLDAGS EEECCCCCHHHHHHHHHHCCCHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEECCC EQLLFWGDVVHSTALQFRNPDWTIPFDADQSLAAQTRKAMFDRAVADQLLVTGMHLDFPG CEEEEEHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCEECCCCC LGRVERDGGAYAFDQAPWQFGL CCCEECCCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA