| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081297
Identifier: 99081297
GI number: 99081297
Start: 1554609
End: 1555856
Strand: Reverse
Name: 99081297
Synonym: TM1040_1456
Alternate gene names: NA
Gene position: 1555856-1554609 (Counterclockwise)
Preceding gene: 99081298
Following gene: 99081296
Centisome position: 48.61
GC content: 60.5
Gene sequence:
>1248_bases ATGAGCAGCACATCCAGCGCAGGTCCGGTGCAGAGACGCCGGGTGTTTTACATACCGGGGTATGACCCGTTCCACCCGCG CCGTTACCGCGAGCTATATCGCAGCGAAGGGGCGGAGCAGGCCGAGATTTCGGGCTACGATCTGACACTGCGCCCGAAAT CCTCGCCGGGACCATTCGGTTGGCATGTGAGCGCCTCTATCGAGGGGGCCGATGTCGAGACCGACATCGAGGTTCTGGTC TGGTCCGACATCGTCAAGCACAGCATGCGCAGCACAGTCGCGGCGACCTATTGGCAGCTTTTGCGAACTGTTTGGATCTA TGTGGCCACGGGGACATTGTGGCGTCTGATGCGCCTGCGAAAAGGACCGGTGATTGCCGCACTTTACCCGGTGGCCATTC TCTTGGTGCAGGCCTTCCTTGCGCTCCTGGCAGGCTATGCGTTCGCCCGATTAACCGGGGTGATTGGCGCGTGGTTCTCC CTGCCTGATCTGGTTGCGATCTTCCTGCAAGGGTCGGTTGGGGCTGGGGCGGCTGTGATGTTGCTGAGGCTGTTCAAGGC GCATGACAACAAGCTCTTTGTATATTACCTCATGCATGATTATGCTTATTCTGCAGGGCTTTGTGGCGCGATCCCTGCCG AGCTCGAGGCGCGGATGAAGGCGTTTACAGCCACTGTTCGCGATGCGCTCACTGAAAACACCGTGGATGAGGTTCTGGTG GTCGGGCATTCCTCCGGCGCCCACATCGGGGTTTCTGTGCTGGCTGATCTCTTGCAGGAGGACCTGCCAGAACAGCGTCC CGTGCTCAGTCTCCTGACATTGGGGCAAGTGGTGCCAATGGTGTCGTTCCTGCCGCGCGCCACGCGTCTGCGACGTGATC TGCGCGAGATTTCTGAGCAGCAGAGCATCGCATGGTATGACGTGACCGCACCCGGCGACGGCTGCGCGTTTGCGCTCTGT GATCCGGTGGCGGTCAGCGGCGTTGCACCACCTGAGCAGCGCTGGCCCATCGTCTTTTCTGCGGCGTTTACCAAGACCCT CAGCCCCGCCCGCTGGCAGGCGCTGAAGCGGCGGTACTTCCGCCTTCATTTTCAGTATCTTTGCGCGTTTGATCAGCCCA AGCACTATGACTATTTTCGGATCACGGCTGGCCCATTGACGCTCGGCGCGCGGCTGAAGGCGCGCGGTCATTCTCGCTCT CGTCTGGCAAAGCCGTTGAGCCGCTACCGGGATATGGACAAGCGATGA
Upstream 100 bases:
>100_bases CGCCACCCCGCCGCCCACGCGGGGTGCACGCACCATCTTACACTGCGCAGCAAGCTGAGTTAGGCTTGGGCGCATAAAGA TCGGGGCGACAAGATCACGC
Downstream 100 bases:
>100_bases CCCTGCGCCCGCCAAAACCCCCGGTACGGCCTGACAGAGTCTCGCTCTGGCGCTACCTGAAGCTGTTTCGGGCCGATATT CTGTCGGCGCAGCCGCAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MSSTSSAGPVQRRRVFYIPGYDPFHPRRYRELYRSEGAEQAEISGYDLTLRPKSSPGPFGWHVSASIEGADVETDIEVLV WSDIVKHSMRSTVAATYWQLLRTVWIYVATGTLWRLMRLRKGPVIAALYPVAILLVQAFLALLAGYAFARLTGVIGAWFS LPDLVAIFLQGSVGAGAAVMLLRLFKAHDNKLFVYYLMHDYAYSAGLCGAIPAELEARMKAFTATVRDALTENTVDEVLV VGHSSGAHIGVSVLADLLQEDLPEQRPVLSLLTLGQVVPMVSFLPRATRLRRDLREISEQQSIAWYDVTAPGDGCAFALC DPVAVSGVAPPEQRWPIVFSAAFTKTLSPARWQALKRRYFRLHFQYLCAFDQPKHYDYFRITAGPLTLGARLKARGHSRS RLAKPLSRYRDMDKR
Sequences:
>Translated_415_residues MSSTSSAGPVQRRRVFYIPGYDPFHPRRYRELYRSEGAEQAEISGYDLTLRPKSSPGPFGWHVSASIEGADVETDIEVLV WSDIVKHSMRSTVAATYWQLLRTVWIYVATGTLWRLMRLRKGPVIAALYPVAILLVQAFLALLAGYAFARLTGVIGAWFS LPDLVAIFLQGSVGAGAAVMLLRLFKAHDNKLFVYYLMHDYAYSAGLCGAIPAELEARMKAFTATVRDALTENTVDEVLV VGHSSGAHIGVSVLADLLQEDLPEQRPVLSLLTLGQVVPMVSFLPRATRLRRDLREISEQQSIAWYDVTAPGDGCAFALC DPVAVSGVAPPEQRWPIVFSAAFTKTLSPARWQALKRRYFRLHFQYLCAFDQPKHYDYFRITAGPLTLGARLKARGHSRS RLAKPLSRYRDMDKR >Mature_414_residues SSTSSAGPVQRRRVFYIPGYDPFHPRRYRELYRSEGAEQAEISGYDLTLRPKSSPGPFGWHVSASIEGADVETDIEVLVW SDIVKHSMRSTVAATYWQLLRTVWIYVATGTLWRLMRLRKGPVIAALYPVAILLVQAFLALLAGYAFARLTGVIGAWFSL PDLVAIFLQGSVGAGAAVMLLRLFKAHDNKLFVYYLMHDYAYSAGLCGAIPAELEARMKAFTATVRDALTENTVDEVLVV GHSSGAHIGVSVLADLLQEDLPEQRPVLSLLTLGQVVPMVSFLPRATRLRRDLREISEQQSIAWYDVTAPGDGCAFALCD PVAVSGVAPPEQRWPIVFSAAFTKTLSPARWQALKRRYFRLHFQYLCAFDQPKHYDYFRITAGPLTLGARLKARGHSRSR LAKPLSRYRDMDKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46384; Mature: 46253
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTSSAGPVQRRRVFYIPGYDPFHPRRYRELYRSEGAEQAEISGYDLTLRPKSSPGPFG CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC WHVSASIEGADVETDIEVLVWSDIVKHSMRSTVAATYWQLLRTVWIYVATGTLWRLMRLR EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGPVIAALYPVAILLVQAFLALLAGYAFARLTGVIGAWFSLPDLVAIFLQGSVGAGAAVM CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LLRLFKAHDNKLFVYYLMHDYAYSAGLCGAIPAELEARMKAFTATVRDALTENTVDEVLV HHHHHHCCCCCEEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEE VGHSSGAHIGVSVLADLLQEDLPEQRPVLSLLTLGQVVPMVSFLPRATRLRRDLREISEQ EECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSIAWYDVTAPGDGCAFALCDPVAVSGVAPPEQRWPIVFSAAFTKTLSPARWQALKRRYF CCEEEEEEECCCCCCEEEEECCHHHCCCCCCCCCCCEEEEHHHHHCCCHHHHHHHHHHHH RLHFQYLCAFDQPKHYDYFRITAGPLTLGARLKARGHSRSRLAKPLSRYRDMDKR HHHHHHHHCCCCCCCCCEEEEECCCEEECCHHHCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure SSTSSAGPVQRRRVFYIPGYDPFHPRRYRELYRSEGAEQAEISGYDLTLRPKSSPGPFG CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC WHVSASIEGADVETDIEVLVWSDIVKHSMRSTVAATYWQLLRTVWIYVATGTLWRLMRLR EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGPVIAALYPVAILLVQAFLALLAGYAFARLTGVIGAWFSLPDLVAIFLQGSVGAGAAVM CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LLRLFKAHDNKLFVYYLMHDYAYSAGLCGAIPAELEARMKAFTATVRDALTENTVDEVLV HHHHHHCCCCCEEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEE VGHSSGAHIGVSVLADLLQEDLPEQRPVLSLLTLGQVVPMVSFLPRATRLRRDLREISEQ EECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSIAWYDVTAPGDGCAFALCDPVAVSGVAPPEQRWPIVFSAAFTKTLSPARWQALKRRYF CCEEEEEEECCCCCCEEEEECCHHHCCCCCCCCCCCEEEEHHHHHCCCHHHHHHHHHHHH RLHFQYLCAFDQPKHYDYFRITAGPLTLGARLKARGHSRSRLAKPLSRYRDMDKR HHHHHHHHCCCCCCCCCEEEEECCCEEECCHHHCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA