Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081291

Identifier: 99081291

GI number: 99081291

Start: 1548715

End: 1549194

Strand: Direct

Name: 99081291

Synonym: TM1040_1450

Alternate gene names: NA

Gene position: 1548715-1549194 (Clockwise)

Preceding gene: 99081290

Following gene: 99081293

Centisome position: 48.38

GC content: 54.79

Gene sequence:

>480_bases
ATGTCCCGTCAGATCGACTATGGTAACCTGATGCATCGTGCCATGCGTGGCTTAATCCGTAATGTCCTTGACGATGTTGC
TGAGCATGGCCTGCCAGGGGCTCATCATTTCTTTATTACGTTCGACACCTCGCACCCGGATGCGGAACTGGCCGATTGGC
TGTCAGACCGGTATCCCGGCGAGATGACCGTGGTGATGCAGCACTGGTTCGACAATCTCAATGTCACCGATGAAGGCTTT
TCGGTCACCCTGAATTTCGGTGACGCGCCAGAGCCGCTGTATATCCCTTATGACGCCATCAAGACCTTCGTCGATCCATC
AGTGGAATTCGGCCTCCGGTTTGAGAGCGCAAATGAAGACGATGACGAGGATATGCCGCCGATCGAAGTGGCAAGCGACA
TGCAGGACGTCGAAGAGGACGACGCACCGGCAGCCAAGAAAGACGCCGATGTTGTGTCGCTGGACAGCTTCCGCAAATAA

Upstream 100 bases:

>100_bases
GCTTGCAATGCCCTCAAAATAGGTCCAAAACTGAAAGAGCTAAGGTGCGGTATCGACCGAAGGTACCAGGGCCGCACCCC
CAATTATAAAAGGTGAGGCG

Downstream 100 bases:

>100_bases
TCTCACGGCGCGGGGTCTTCCCCGCACTCGCGTGTTGTCCAGATGCAAAATGGCGCCCCGATCTCTTCGGCGGCGCCGTT
TCTATTTCGGAGCATCCCTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSRQIDYGNLMHRAMRGLIRNVLDDVAEHGLPGAHHFFITFDTSHPDAELADWLSDRYPGEMTVVMQHWFDNLNVTDEGF
SVTLNFGDAPEPLYIPYDAIKTFVDPSVEFGLRFESANEDDDEDMPPIEVASDMQDVEEDDAPAAKKDADVVSLDSFRK

Sequences:

>Translated_159_residues
MSRQIDYGNLMHRAMRGLIRNVLDDVAEHGLPGAHHFFITFDTSHPDAELADWLSDRYPGEMTVVMQHWFDNLNVTDEGF
SVTLNFGDAPEPLYIPYDAIKTFVDPSVEFGLRFESANEDDDEDMPPIEVASDMQDVEEDDAPAAKKDADVVSLDSFRK
>Mature_158_residues
SRQIDYGNLMHRAMRGLIRNVLDDVAEHGLPGAHHFFITFDTSHPDAELADWLSDRYPGEMTVVMQHWFDNLNVTDEGFS
VTLNFGDAPEPLYIPYDAIKTFVDPSVEFGLRFESANEDDDEDMPPIEVASDMQDVEEDDAPAAKKDADVVSLDSFRK

Specific function: Unknown

COG id: COG3814

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17983; Mature: 17852

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRQIDYGNLMHRAMRGLIRNVLDDVAEHGLPGAHHFFITFDTSHPDAELADWLSDRYPG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCC
EMTVVMQHWFDNLNVTDEGFSVTLNFGDAPEPLYIPYDAIKTFVDPSVEFGLRFESANED
HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEECHHHHHHHHCCCCCEEEEECCCCCC
DDEDMPPIEVASDMQDVEEDDAPAAKKDADVVSLDSFRK
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure 
SRQIDYGNLMHRAMRGLIRNVLDDVAEHGLPGAHHFFITFDTSHPDAELADWLSDRYPG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCC
EMTVVMQHWFDNLNVTDEGFSVTLNFGDAPEPLYIPYDAIKTFVDPSVEFGLRFESANED
HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEECHHHHHHHHCCCCCEEEEECCCCCC
DDEDMPPIEVASDMQDVEEDDAPAAKKDADVVSLDSFRK
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA