Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081289

Identifier: 99081289

GI number: 99081289

Start: 1546769

End: 1547203

Strand: Direct

Name: 99081289

Synonym: TM1040_1448

Alternate gene names: NA

Gene position: 1546769-1547203 (Clockwise)

Preceding gene: 99081288

Following gene: 99081290

Centisome position: 48.32

GC content: 58.16

Gene sequence:

>435_bases
ATGAAAAACAGCGCCCTGCTGAAATACTGGTTCGAAGAAGTCTGGAACAAAGACAACCTCTCCGTCATCGACGAGCTTCT
GGACCCGGATGTAACCTTCAATGGCGCGCTCGACGGCGTAGCAGCCCCCGGTGTGGACTACAAGGAAGTGGTCGGCGCGC
TCAAGGCGCGGCTGGATCAGCCTTATGTGACCATCACCCACAGCATGGATGATGGCGATCTGGCGATGGTGCGCGTACAG
GTACGTGCCCACGATCTGACCCGGACGCGCGAATTGGATTTCACCGGTCAGATGTGTGTCCGCGTGCGCGATGGCCGCTT
TGTCGAGTTCTATTCGAACTTTGACTACTTGCGGATGTTCGAGCAGCTCGGCCAATTGCCCAGCGACGCCCTGCCGGTCT
GCCTGACCGGAGAGAAGCTGACCTGGGTCGAATAA

Upstream 100 bases:

>100_bases
GTAGGGTTGCGAAGTTACGGCGTTATGGCTCTCGACATTATGTGTAACTTCACTTAGGCGGCGCCTTTGGTAACTGTTAA
GATGATGAAGCTTCTCTGAG

Downstream 100 bases:

>100_bases
TCCAGACCAGATGACGGCCCATCCCGCCTGCTCGGCGGGTGGGCAAGGCTCTGGCTATCCTGTCAGGCTTTGATAGAAGG
GGCGCAGGTGTAATCAACCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MKNSALLKYWFEEVWNKDNLSVIDELLDPDVTFNGALDGVAAPGVDYKEVVGALKARLDQPYVTITHSMDDGDLAMVRVQ
VRAHDLTRTRELDFTGQMCVRVRDGRFVEFYSNFDYLRMFEQLGQLPSDALPVCLTGEKLTWVE

Sequences:

>Translated_144_residues
MKNSALLKYWFEEVWNKDNLSVIDELLDPDVTFNGALDGVAAPGVDYKEVVGALKARLDQPYVTITHSMDDGDLAMVRVQ
VRAHDLTRTRELDFTGQMCVRVRDGRFVEFYSNFDYLRMFEQLGQLPSDALPVCLTGEKLTWVE
>Mature_144_residues
MKNSALLKYWFEEVWNKDNLSVIDELLDPDVTFNGALDGVAAPGVDYKEVVGALKARLDQPYVTITHSMDDGDLAMVRVQ
VRAHDLTRTRELDFTGQMCVRVRDGRFVEFYSNFDYLRMFEQLGQLPSDALPVCLTGEKLTWVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16453; Mature: 16453

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSALLKYWFEEVWNKDNLSVIDELLDPDVTFNGALDGVAAPGVDYKEVVGALKARLDQ
CCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCC
PYVTITHSMDDGDLAMVRVQVRAHDLTRTRELDFTGQMCVRVRDGRFVEFYSNFDYLRMF
CEEEEEECCCCCCEEEEEEEEEHHCCCHHCCCCCCCEEEEEECCCCEEEEECCCHHHHHH
EQLGQLPSDALPVCLTGEKLTWVE
HHHCCCCCCCCCEEEECCEEEECC
>Mature Secondary Structure
MKNSALLKYWFEEVWNKDNLSVIDELLDPDVTFNGALDGVAAPGVDYKEVVGALKARLDQ
CCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCC
PYVTITHSMDDGDLAMVRVQVRAHDLTRTRELDFTGQMCVRVRDGRFVEFYSNFDYLRMF
CEEEEEECCCCCCEEEEEEEEEHHCCCHHCCCCCCCEEEEEECCCCEEEEECCCHHHHHH
EQLGQLPSDALPVCLTGEKLTWVE
HHHCCCCCCCCCEEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA