| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yejA [C]
Identifier: 99081184
GI number: 99081184
Start: 1430594
End: 1432423
Strand: Direct
Name: yejA [C]
Synonym: TM1040_1343
Alternate gene names: 99081184
Gene position: 1430594-1432423 (Clockwise)
Preceding gene: 99081181
Following gene: 99081185
Centisome position: 44.69
GC content: 58.8
Gene sequence:
>1830_bases ATGAGACCATTATTTTTCTCTTCTATCCGCTCAGCCGTGGCTGGAATCACGTTTCTCACCGGGGCGTCCTTTGCGGCCGC AGAATCAGCCCATGGCATCGCCATGTATGGCGATCCCCAGCTTTCGCCGGGGTTTGAATCTCTGCCCTATGTGAACCCCG AAGCCCCAAAAGGCGGCGCGGTTGTATTTGGCAATCTGGGCGGTTTTGACTCCCTCAATCCATTTACCCAGAAAGGCAAC CCGCCCTGGCAAATGCGGTTCTGGGGTTACGAGAGTTTGATGGGGCGCTCCTATGACGAGCCGTTTTCGCTCTATGGGTT GCTGGCCGAATCGATTGAAACGCCAGAGGACAGATCCTGGGTCGAATTCACGCTGCGCGAAGAGGCCAGGTTTTCGGACG GCACCCCGGTCACGATCGAGGATGTCATCTGGTCCTACGAGACCCTCGGCACCGAGGGAAACCTGCGCTATCGCGGTTTC TGGGCCAAGGTTGACAGCATTGAGCAGACCGGCCCGCGGAGCCTGCGGCTGACGTTCAATGTCGAGGATCGCGAGCTCGC GTTGATCGCTGGGCTGCGACCCATCCTCAAGAAGTCACAGTGGGATGGGCGTGACTTTGCAGATGCTCCGCCGAATGAGG CCCCCATCGGCACGGCGCCCTATGTGGTGAGCGACTTTGAACTTGGTCGCTCTGTGACTTTCACCCGCAACGCTGACTAT TGGGGCAAGGATCTGCCACTGCGCCGGGGCACCAATAATTTCGACGAAATGCGACTCGAGTTCTTTGGCGACCAAACGGT CCTCTTTGAAGCCTTCAAGGCAGGGGAACTCTCGGCGGTGCGTGAATTCAACGCTGCGAAGTGGGATAGCGATTACGGTT TTGCACGCGTGCAAAATGGGGATGTCATCAAGACGGAAATTCCCAATCAGAAACCCTCGGGCATGACGGGGCTTGTGATG AATACAAGGCGCGCACCATTGGATGACTGGCGGGTGCGGCAGGCTCTTATCGAGGCGTTCAACTACGAGTTCATCAATGA CACGCTGACCGGCGGGCGACTGCCGCGCATCACCTCTTATTTCTCGAACTCTTACCTGTCGATGCAGCCGGGAGAGGCAA CAGGTCGTGTGGCAGAGCTGCTGGAGCCCTTTAAGGATGCGCTTCTTCCCGGCACGCTCGAAGGCTATGCGCTTCCGGTT TCTGATGGCAGCGAGCGCAACCGCGCCAATCTGCGCCGTGCCCGCGCCCTGTTGCAGGATGCCGGCTGGACCGTCGGAGA CGACGGGATACTGCGCGACGCGAAGGGCGCCACGATGGCGCTCAAGGTTCTGCTCCAGAATGGCAACCTCGGCGAAGCTG AGATGCAAAAAGCCGTCGACATCTATGCCACCGCACTGGAACGTCTGGGGATCAGCCTGACCACAGACCTCGTTGACAGC GCACAATATGTCGAGCGCCAGGACGCCTATGAATTTGATCTGACCTTCTTTCGCCGCGCGCTTTCGCTCAGCCCCGGCAA CGAACAGATGCTCTATTGGGGCAGCGCAGGGGCGGACACGCCCGGCTCTCGTAACCTGATGGGCATGAAAAGCCCCGCTG CCGAGGCGATGATCCAGCATATGCTGACGACCAAATCCTCGGAAGAGTTCATTGCCGCAGCCCGTGCTCTGGACCGGGTA TTGACCGCAGGACGCTATGTGATTCCCATCTGGCAGTACGCAAAAAGCCGCATCGCGCATGAGGCAAGCCTGCGCTACCC GATGCGCATCCCGATCTATGGCGACGGGATCTATTACATGCCCGAGGTCTGGTGGAACGCCTCCGAATAA
Upstream 100 bases:
>100_bases AATTTCTGGCCTCGGTCCAAGCTAAAAGTTTGAACTCTTCCCGTAGCCCAGATAGCGTCATGACTTATGAAAATAAGGGC AGCGCAGGATTGTTCTCAAA
Downstream 100 bases:
>100_bases ACCTCTAACCGGCCCTCTGGGCCGGTTTTTTTTCGCATCTGGCGAGGGGATTGAGTGGAAAATCATGCGCTGTTTTCTCA CTGAAACGGCGCCTTTGAGC
Product: extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 609; Mature: 609
Protein sequence:
>609_residues MRPLFFSSIRSAVAGITFLTGASFAAAESAHGIAMYGDPQLSPGFESLPYVNPEAPKGGAVVFGNLGGFDSLNPFTQKGN PPWQMRFWGYESLMGRSYDEPFSLYGLLAESIETPEDRSWVEFTLREEARFSDGTPVTIEDVIWSYETLGTEGNLRYRGF WAKVDSIEQTGPRSLRLTFNVEDRELALIAGLRPILKKSQWDGRDFADAPPNEAPIGTAPYVVSDFELGRSVTFTRNADY WGKDLPLRRGTNNFDEMRLEFFGDQTVLFEAFKAGELSAVREFNAAKWDSDYGFARVQNGDVIKTEIPNQKPSGMTGLVM NTRRAPLDDWRVRQALIEAFNYEFINDTLTGGRLPRITSYFSNSYLSMQPGEATGRVAELLEPFKDALLPGTLEGYALPV SDGSERNRANLRRARALLQDAGWTVGDDGILRDAKGATMALKVLLQNGNLGEAEMQKAVDIYATALERLGISLTTDLVDS AQYVERQDAYEFDLTFFRRALSLSPGNEQMLYWGSAGADTPGSRNLMGMKSPAAEAMIQHMLTTKSSEEFIAAARALDRV LTAGRYVIPIWQYAKSRIAHEASLRYPMRIPIYGDGIYYMPEVWWNASE
Sequences:
>Translated_609_residues MRPLFFSSIRSAVAGITFLTGASFAAAESAHGIAMYGDPQLSPGFESLPYVNPEAPKGGAVVFGNLGGFDSLNPFTQKGN PPWQMRFWGYESLMGRSYDEPFSLYGLLAESIETPEDRSWVEFTLREEARFSDGTPVTIEDVIWSYETLGTEGNLRYRGF WAKVDSIEQTGPRSLRLTFNVEDRELALIAGLRPILKKSQWDGRDFADAPPNEAPIGTAPYVVSDFELGRSVTFTRNADY WGKDLPLRRGTNNFDEMRLEFFGDQTVLFEAFKAGELSAVREFNAAKWDSDYGFARVQNGDVIKTEIPNQKPSGMTGLVM NTRRAPLDDWRVRQALIEAFNYEFINDTLTGGRLPRITSYFSNSYLSMQPGEATGRVAELLEPFKDALLPGTLEGYALPV SDGSERNRANLRRARALLQDAGWTVGDDGILRDAKGATMALKVLLQNGNLGEAEMQKAVDIYATALERLGISLTTDLVDS AQYVERQDAYEFDLTFFRRALSLSPGNEQMLYWGSAGADTPGSRNLMGMKSPAAEAMIQHMLTTKSSEEFIAAARALDRV LTAGRYVIPIWQYAKSRIAHEASLRYPMRIPIYGDGIYYMPEVWWNASE >Mature_609_residues MRPLFFSSIRSAVAGITFLTGASFAAAESAHGIAMYGDPQLSPGFESLPYVNPEAPKGGAVVFGNLGGFDSLNPFTQKGN PPWQMRFWGYESLMGRSYDEPFSLYGLLAESIETPEDRSWVEFTLREEARFSDGTPVTIEDVIWSYETLGTEGNLRYRGF WAKVDSIEQTGPRSLRLTFNVEDRELALIAGLRPILKKSQWDGRDFADAPPNEAPIGTAPYVVSDFELGRSVTFTRNADY WGKDLPLRRGTNNFDEMRLEFFGDQTVLFEAFKAGELSAVREFNAAKWDSDYGFARVQNGDVIKTEIPNQKPSGMTGLVM NTRRAPLDDWRVRQALIEAFNYEFINDTLTGGRLPRITSYFSNSYLSMQPGEATGRVAELLEPFKDALLPGTLEGYALPV SDGSERNRANLRRARALLQDAGWTVGDDGILRDAKGATMALKVLLQNGNLGEAEMQKAVDIYATALERLGISLTTDLVDS AQYVERQDAYEFDLTFFRRALSLSPGNEQMLYWGSAGADTPGSRNLMGMKSPAAEAMIQHMLTTKSSEEFIAAARALDRV LTAGRYVIPIWQYAKSRIAHEASLRYPMRIPIYGDGIYYMPEVWWNASE
Specific function: Unknown
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=592, Percent_Identity=31.0810810810811, Blast_Score=283, Evalue=2e-77, Organism=Escherichia coli, GI1789887, Length=421, Percent_Identity=23.5154394299287, Blast_Score=73, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 67920; Mature: 67920
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPLFFSSIRSAVAGITFLTGASFAAAESAHGIAMYGDPQLSPGFESLPYVNPEAPKGGA CCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCE VVFGNLGGFDSLNPFTQKGNPPWQMRFWGYESLMGRSYDEPFSLYGLLAESIETPEDRSW EEEECCCCCCCCCCHHCCCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE VEFTLREEARFSDGTPVTIEDVIWSYETLGTEGNLRYRGFWAKVDSIEQTGPRSLRLTFN EEEEEHHHCCCCCCCCEEHHHHHHHHHHCCCCCCEEEEEEEEECCCHHCCCCCEEEEEEE VEDRELALIAGLRPILKKSQWDGRDFADAPPNEAPIGTAPYVVSDFELGRSVTFTRNADY CCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHCCCEEEEEECCCC WGKDLPLRRGTNNFDEMRLEFFGDQTVLFEAFKAGELSAVREFNAAKWDSDYGFARVQNG CCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHCCCCHHHHHHCCCCCCCCCCCEEEECCC DVIKTEIPNQKPSGMTGLVMNTRRAPLDDWRVRQALIEAFNYEFINDTLTGGRLPRITSY CEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHH FSNSYLSMQPGEATGRVAELLEPFKDALLPGTLEGYALPVSDGSERNRANLRRARALLQD HCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH AGWTVGDDGILRDAKGATMALKVLLQNGNLGEAEMQKAVDIYATALERLGISLTTDLVDS CCCEECCCCCEECCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AQYVERQDAYEFDLTFFRRALSLSPGNEQMLYWGSAGADTPGSRNLMGMKSPAAEAMIQH HHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH MLTTKSSEEFIAAARALDRVLTAGRYVIPIWQYAKSRIAHEASLRYPMRIPIYGDGIYYM HHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCEEEC PEVWWNASE CCCCCCCCC >Mature Secondary Structure MRPLFFSSIRSAVAGITFLTGASFAAAESAHGIAMYGDPQLSPGFESLPYVNPEAPKGGA CCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCE VVFGNLGGFDSLNPFTQKGNPPWQMRFWGYESLMGRSYDEPFSLYGLLAESIETPEDRSW EEEECCCCCCCCCCHHCCCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE VEFTLREEARFSDGTPVTIEDVIWSYETLGTEGNLRYRGFWAKVDSIEQTGPRSLRLTFN EEEEEHHHCCCCCCCCEEHHHHHHHHHHCCCCCCEEEEEEEEECCCHHCCCCCEEEEEEE VEDRELALIAGLRPILKKSQWDGRDFADAPPNEAPIGTAPYVVSDFELGRSVTFTRNADY CCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHCCCEEEEEECCCC WGKDLPLRRGTNNFDEMRLEFFGDQTVLFEAFKAGELSAVREFNAAKWDSDYGFARVQNG CCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHCCCCHHHHHHCCCCCCCCCCCEEEECCC DVIKTEIPNQKPSGMTGLVMNTRRAPLDDWRVRQALIEAFNYEFINDTLTGGRLPRITSY CEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHH FSNSYLSMQPGEATGRVAELLEPFKDALLPGTLEGYALPVSDGSERNRANLRRARALLQD HCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH AGWTVGDDGILRDAKGATMALKVLLQNGNLGEAEMQKAVDIYATALERLGISLTTDLVDS CCCEECCCCCEECCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AQYVERQDAYEFDLTFFRRALSLSPGNEQMLYWGSAGADTPGSRNLMGMKSPAAEAMIQH HHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH MLTTKSSEEFIAAARALDRVLTAGRYVIPIWQYAKSRIAHEASLRYPMRIPIYGDGIYYM HHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCEEEC PEVWWNASE CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA