| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081156
Identifier: 99081156
GI number: 99081156
Start: 1402687
End: 1403685
Strand: Reverse
Name: 99081156
Synonym: TM1040_1315
Alternate gene names: NA
Gene position: 1403685-1402687 (Counterclockwise)
Preceding gene: 99081157
Following gene: 99081155
Centisome position: 43.85
GC content: 58.76
Gene sequence:
>999_bases ATGACGGCCAAGAAAGAGGCATCGGTCAGCATTCGCCGCCGTACTGCATTCTCGACAATCCCGAACGCTTTGATCCGCGA TGTGGAGATCTCGCCAGAGGCGCGGCTCCTGCTTTGCTACATCATGTCATGCAGCGATAGTTGGACGTTCTACGTTTCCG AATGTCAGCGCATCCTCGGCTGCAAAAAAGACAAGTGGCAGCGGATCCGCCGCGAGGTGATCGAAGCGGGCTATCTACGC GTCCACGCCAAGAACGGCGAAAACGGGCGCCTGGAGGGATATATCTGGGAAGTGTTCGACGAACCGCAGGCACCAGATGC AGTGTCATCAGGGGGTAGCGAGCCACAAGATGCGGGGGAAAACGGCAATCACCGTGAGCCGGAAAAACCGGCTACCGGTG CGCAGCCGGTCGAACCCTCTCACCGTGAGCCGGAAAAACCCGCCCGCCGGTTGAACCCGCCCGCCGGAAAAACCGGCCCC ATAAGAAAGAACAACAAACAAAAAGAAAAACAAACAAGTTGCGCGGACCAATCCGCGCCCACAACGGATGTTTGTTCGGA TAATTTGTTGAAAGACTTCGAGCGGGTGTTTCCGAAGCTGGCGACAGCGAAGGCAACCCTTCGAGCGATCAGCAGAGCCT TGGAGTCCGGGGCTACTGCCGAGCAGATCATCGGCGCAGCCGAGGCCTATGCGGCTGAGCAGCAGGGAAACGCCCCGCGC TATATCCGCCGCGCAGATCGGTTTTTCGAGGATGGTTTCTGGCAAACCTACGTTCCAGCCCAGCCTGCCACGCCCAGCGC ATCCGAAACTGATTTCGTCGAACACTGGGCAAAGACGATACGCAGCGTCGAAATGGGCCATTTCATGTTCGGCAAGATCA GCCCTGACACCGCAGCGAAGTGCATCCGTGCCGGGAAGGTGACCGCTGCGGACTGCCGTAGGGCTGGACTTCGCATCACC GACGCAGAGGCGCAAGCCATGCTTGAGGTGGCGCAATGA
Upstream 100 bases:
>100_bases CGCACAAGATCTTGGGCCCTGCGGTCGCATCGACGGTTCCAGCCGCGTCGCTCGGCGGAAAGCTATTCTCGCAAGCCTTG GCGCAGCTAAGGGGGCGGTC
Downstream 100 bases:
>100_bases GCAACCATGCTGACCCCGACACCCATGGCCACCGCTTTGGAGCTGTGGTCGTGACCGTCGATCTCGCACTGGGCGATTGC GTGATCCGCGCCCCGCAACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MTAKKEASVSIRRRTAFSTIPNALIRDVEISPEARLLLCYIMSCSDSWTFYVSECQRILGCKKDKWQRIRREVIEAGYLR VHAKNGENGRLEGYIWEVFDEPQAPDAVSSGGSEPQDAGENGNHREPEKPATGAQPVEPSHREPEKPARRLNPPAGKTGP IRKNNKQKEKQTSCADQSAPTTDVCSDNLLKDFERVFPKLATAKATLRAISRALESGATAEQIIGAAEAYAAEQQGNAPR YIRRADRFFEDGFWQTYVPAQPATPSASETDFVEHWAKTIRSVEMGHFMFGKISPDTAAKCIRAGKVTAADCRRAGLRIT DAEAQAMLEVAQ
Sequences:
>Translated_332_residues MTAKKEASVSIRRRTAFSTIPNALIRDVEISPEARLLLCYIMSCSDSWTFYVSECQRILGCKKDKWQRIRREVIEAGYLR VHAKNGENGRLEGYIWEVFDEPQAPDAVSSGGSEPQDAGENGNHREPEKPATGAQPVEPSHREPEKPARRLNPPAGKTGP IRKNNKQKEKQTSCADQSAPTTDVCSDNLLKDFERVFPKLATAKATLRAISRALESGATAEQIIGAAEAYAAEQQGNAPR YIRRADRFFEDGFWQTYVPAQPATPSASETDFVEHWAKTIRSVEMGHFMFGKISPDTAAKCIRAGKVTAADCRRAGLRIT DAEAQAMLEVAQ >Mature_331_residues TAKKEASVSIRRRTAFSTIPNALIRDVEISPEARLLLCYIMSCSDSWTFYVSECQRILGCKKDKWQRIRREVIEAGYLRV HAKNGENGRLEGYIWEVFDEPQAPDAVSSGGSEPQDAGENGNHREPEKPATGAQPVEPSHREPEKPARRLNPPAGKTGPI RKNNKQKEKQTSCADQSAPTTDVCSDNLLKDFERVFPKLATAKATLRAISRALESGATAEQIIGAAEAYAAEQQGNAPRY IRRADRFFEDGFWQTYVPAQPATPSASETDFVEHWAKTIRSVEMGHFMFGKISPDTAAKCIRAGKVTAADCRRAGLRITD AEAQAMLEVAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36742; Mature: 36610
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAKKEASVSIRRRTAFSTIPNALIRDVEISPEARLLLCYIMSCSDSWTFYVSECQRILG CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHC CKKDKWQRIRREVIEAGYLRVHAKNGENGRLEGYIWEVFDEPQAPDAVSSGGSEPQDAGE CCHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEEECCCCCCCCHHHCCCCCCHHCCC NGNHREPEKPATGAQPVEPSHREPEKPARRLNPPAGKTGPIRKNNKQKEKQTSCADQSAP CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC TTDVCSDNLLKDFERVFPKLATAKATLRAISRALESGATAEQIIGAAEAYAAEQQGNAPR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHH YIRRADRFFEDGFWQTYVPAQPATPSASETDFVEHWAKTIRSVEMGHFMFGKISPDTAAK HHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHEECCCCHHHHHH CIRAGKVTAADCRRAGLRITDAEAQAMLEVAQ HHHHCCCCHHHHHHCCCEEECHHHHHHHHHCC >Mature Secondary Structure TAKKEASVSIRRRTAFSTIPNALIRDVEISPEARLLLCYIMSCSDSWTFYVSECQRILG CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHC CKKDKWQRIRREVIEAGYLRVHAKNGENGRLEGYIWEVFDEPQAPDAVSSGGSEPQDAGE CCHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEEECCCCCCCCHHHCCCCCCHHCCC NGNHREPEKPATGAQPVEPSHREPEKPARRLNPPAGKTGPIRKNNKQKEKQTSCADQSAP CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC TTDVCSDNLLKDFERVFPKLATAKATLRAISRALESGATAEQIIGAAEAYAAEQQGNAPR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHH YIRRADRFFEDGFWQTYVPAQPATPSASETDFVEHWAKTIRSVEMGHFMFGKISPDTAAK HHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHEECCCCHHHHHH CIRAGKVTAADCRRAGLRITDAEAQAMLEVAQ HHHHCCCCHHHHHHCCCEEECHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA