Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081140

Identifier: 99081140

GI number: 99081140

Start: 1390120

End: 1392111

Strand: Reverse

Name: 99081140

Synonym: TM1040_1299

Alternate gene names: NA

Gene position: 1392111-1390120 (Counterclockwise)

Preceding gene: 99081141

Following gene: 99081139

Centisome position: 43.49

GC content: 61.75

Gene sequence:

>1992_bases
TTGACCCGCGAAGTCACAGCGGAGCAGATCAACGCGCGCGGCGAGGGCGGTGCGATGCGCCGCATGGGAGAGGTGCGCGA
AATCAACGTCGAGGCGCGCACTGTCGAGCTTGCCTTCTCGAGCACGACCCCGGTGCGGCGCTGGTTTGGCGATGAGGTGC
TTTCCCATGACGCCGAGGCCGTGGTTCTGGACCGTCTGCTCGACGGCGGGGCAGTATTGGTCGGGCACAATTGGGACGAT
CAGGTCGGCGTTGTGCAAAGTGCGCGCGTCGATTCCGACGGCGTCGGGCGCGCTGTTGTGCGGTTCGGCAAGAGCGCCCG
CGCGAGCGAGATCTTTCAGGACATCGTCGACGGCATTCGGCAGCACGTCTCGGTTGGCTACCGGGTGATCACGATCAGCG
AGGAAATACGGGAAGGTCAGCCGAACCTTATCACGGTCACGCGCTGGGAGCCGTTCGAGATTTCGGTCGTACCGGTGCCA
GCTGATCCGACAGTCGGCATCGGTCGCGCGCTGGAAAATCCGCCAGAGGCGGGCGGGGCGGATCGTGGCCAAACTGGCGA
AGAGAATGCGGGCGCGGTGGCCGAGCCCAACGATACAGGACAAAGGGAAACACAGATGAAAACCATCATCACCCGCGACG
CCGAGGGCAATCTTGTCCGGGCCAAGGTCGACGAAAACGATCAGATCATCGAAGTGATCGAGGTGCTCGAACGTGCAGGC
GCAGCGGAAACTGCCATGCTGTCGCGTCTGCAGGAGCAGGAAGCGGCCCGCGTGCGCGAACTGACCGAGTTGGGTCGCGA
ATACGACGCGCCGGAGCTCGCAACAGAAATGATTGCCGGGCGTCATGGCGTGACCGACATGCGCGAACGCCTGCTTGATC
ACCTACACCAGCGCAGCAATGAAAGTCGCCAAATTTCTGAGCGTTCCAGCATTGGCCTGACCGACAGCGAAACAGAGCAG
TTTTCGTTCCTGCGCGCGATCCGGGCGCTGGCAAATCCGACAGACCGCAGCGCCCAGGAAGCGGCTGCTTTCGAGTTCGA
GGTCTCCGATGCTGCCGCCGAGGCGCAGGGGCGCGATGCGCAGGGCGTAATGGTGCCGATGGACGTGCTGATGCGTGCGC
CGCTGAACACGGGTTCCGGTGGCGCGACCGCTGCCGATACCGGCGGCAACACCATCGCAAACCCGTTGCTGACGCAGAGC
TTTATTCAGATGCTGCGCAACCGTACGATCCTTTTGCAGCTCGCGACTCCGCTGATGGGTCTGGTGGGCAACCCTGATAT
CCCGACGCAGGAAGGTGGTGCGACCGGCTACTGGATCGGTGAGGATATCGAGGCGACAGAGGATCTGCTGTCTCTGGGTC
AGCGCCAGTTTTCTCCGAAAACTGTTGCGGCCTATTCGGAGATCACGCGCCGCACTCTCAAGCAATCCAGTTTGGATATC
GAGGCGCTGGTGCGTAGTGACCTTGCGCTCGCATTGGCAACCTCGCTGGATTTTGCGGGTTTCTATGGCACCGGCGCCAA
CGATCAGCCGCTGGGTATCGCGAATACGAGCGGCGTGAATGTGGTCGACTTTGGCGGCGCAGCGTCTGGTGGCGGATCCG
CCCTCCCGACCTGGGCCGAAGTGATCCAGATGGAGAGCGAGATTTCTGCTGCAAATGCCGATGTGAATAGCATGGCGTAT
GTGCAGAACGCCAAGATGCGTGGTCACTTCAAGAGCACGCAGAAATTCAGCGGCACAAACGGTGCGCCCATCTGGGAGAG
CGACAACACCGTGAACGGATATCGCGGCGAAGTTACCAACCAGATTAAAGATGGTGACGTGTTCCACGGTGATTTCGCGA
ACGTCCTGGTTGGCATGTGGGGTGGTCTGGATATTACGGTGGACCCGTACACCCACAGCCGCCGCGGGCGCCTGCGCATC
GTGACGATGCAGGACGCGGATTATGTTCTGCGTCACCCGGCGGGCCTCTGCTTCGGCACTGACGCCAGCTAA

Upstream 100 bases:

>100_bases
GGGCAGGGCAGTGGACAGCCAGCCAAAACCGGCACCGGAGAAACCGACCCAGACGCCGACCCAGACCCCGACAAAAGCGA
ATGACATTATCGGGCGGTCG

Downstream 100 bases:

>100_bases
CCCGAGCACGCATTAAATCTCTGGCCTGATCAGGCCAGAGACACCCCCTGAAAAAGGATCGAAAACGTGGCTGATACCAA
GAAACCGCAGAAAAAGATTT

Product: peptidase U35, phage prohead HK97

Products: NA

Alternate protein names: Peptidase U; Capsid Protein HK; Phage-Related Protein; Phage Capsid Protein; Phage Protease; Peptidase S

Number of amino acids: Translated: 663; Mature: 662

Protein sequence:

>663_residues
MTREVTAEQINARGEGGAMRRMGEVREINVEARTVELAFSSTTPVRRWFGDEVLSHDAEAVVLDRLLDGGAVLVGHNWDD
QVGVVQSARVDSDGVGRAVVRFGKSARASEIFQDIVDGIRQHVSVGYRVITISEEIREGQPNLITVTRWEPFEISVVPVP
ADPTVGIGRALENPPEAGGADRGQTGEENAGAVAEPNDTGQRETQMKTIITRDAEGNLVRAKVDENDQIIEVIEVLERAG
AAETAMLSRLQEQEAARVRELTELGREYDAPELATEMIAGRHGVTDMRERLLDHLHQRSNESRQISERSSIGLTDSETEQ
FSFLRAIRALANPTDRSAQEAAAFEFEVSDAAAEAQGRDAQGVMVPMDVLMRAPLNTGSGGATAADTGGNTIANPLLTQS
FIQMLRNRTILLQLATPLMGLVGNPDIPTQEGGATGYWIGEDIEATEDLLSLGQRQFSPKTVAAYSEITRRTLKQSSLDI
EALVRSDLALALATSLDFAGFYGTGANDQPLGIANTSGVNVVDFGGAASGGGSALPTWAEVIQMESEISAANADVNSMAY
VQNAKMRGHFKSTQKFSGTNGAPIWESDNTVNGYRGEVTNQIKDGDVFHGDFANVLVGMWGGLDITVDPYTHSRRGRLRI
VTMQDADYVLRHPAGLCFGTDAS

Sequences:

>Translated_663_residues
MTREVTAEQINARGEGGAMRRMGEVREINVEARTVELAFSSTTPVRRWFGDEVLSHDAEAVVLDRLLDGGAVLVGHNWDD
QVGVVQSARVDSDGVGRAVVRFGKSARASEIFQDIVDGIRQHVSVGYRVITISEEIREGQPNLITVTRWEPFEISVVPVP
ADPTVGIGRALENPPEAGGADRGQTGEENAGAVAEPNDTGQRETQMKTIITRDAEGNLVRAKVDENDQIIEVIEVLERAG
AAETAMLSRLQEQEAARVRELTELGREYDAPELATEMIAGRHGVTDMRERLLDHLHQRSNESRQISERSSIGLTDSETEQ
FSFLRAIRALANPTDRSAQEAAAFEFEVSDAAAEAQGRDAQGVMVPMDVLMRAPLNTGSGGATAADTGGNTIANPLLTQS
FIQMLRNRTILLQLATPLMGLVGNPDIPTQEGGATGYWIGEDIEATEDLLSLGQRQFSPKTVAAYSEITRRTLKQSSLDI
EALVRSDLALALATSLDFAGFYGTGANDQPLGIANTSGVNVVDFGGAASGGGSALPTWAEVIQMESEISAANADVNSMAY
VQNAKMRGHFKSTQKFSGTNGAPIWESDNTVNGYRGEVTNQIKDGDVFHGDFANVLVGMWGGLDITVDPYTHSRRGRLRI
VTMQDADYVLRHPAGLCFGTDAS
>Mature_662_residues
TREVTAEQINARGEGGAMRRMGEVREINVEARTVELAFSSTTPVRRWFGDEVLSHDAEAVVLDRLLDGGAVLVGHNWDDQ
VGVVQSARVDSDGVGRAVVRFGKSARASEIFQDIVDGIRQHVSVGYRVITISEEIREGQPNLITVTRWEPFEISVVPVPA
DPTVGIGRALENPPEAGGADRGQTGEENAGAVAEPNDTGQRETQMKTIITRDAEGNLVRAKVDENDQIIEVIEVLERAGA
AETAMLSRLQEQEAARVRELTELGREYDAPELATEMIAGRHGVTDMRERLLDHLHQRSNESRQISERSSIGLTDSETEQF
SFLRAIRALANPTDRSAQEAAAFEFEVSDAAAEAQGRDAQGVMVPMDVLMRAPLNTGSGGATAADTGGNTIANPLLTQSF
IQMLRNRTILLQLATPLMGLVGNPDIPTQEGGATGYWIGEDIEATEDLLSLGQRQFSPKTVAAYSEITRRTLKQSSLDIE
ALVRSDLALALATSLDFAGFYGTGANDQPLGIANTSGVNVVDFGGAASGGGSALPTWAEVIQMESEISAANADVNSMAYV
QNAKMRGHFKSTQKFSGTNGAPIWESDNTVNGYRGEVTNQIKDGDVFHGDFANVLVGMWGGLDITVDPYTHSRRGRLRIV
TMQDADYVLRHPAGLCFGTDAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 71452; Mature: 71321

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS00191 CYTOCHROME_B5_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTREVTAEQINARGEGGAMRRMGEVREINVEARTVELAFSSTTPVRRWFGDEVLSHDAEA
CCCCCCHHHHCCCCCCHHHHHHCCHHEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCHH
VVLDRLLDGGAVLVGHNWDDQVGVVQSARVDSDGVGRAVVRFGKSARASEIFQDIVDGIR
HHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH
QHVSVGYRVITISEEIREGQPNLITVTRWEPFEISVVPVPADPTVGIGRALENPPEAGGA
HHHHCCEEEEEEEHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCCCHHHCCCCCCCCC
DRGQTGEENAGAVAEPNDTGQRETQMKTIITRDAEGNLVRAKVDENDQIIEVIEVLERAG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCEEEEEECCCHHHHHHHHHHHHCC
AAETAMLSRLQEQEAARVRELTELGREYDAPELATEMIAGRHGVTDMRERLLDHLHQRSN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
ESRQISERSSIGLTDSETEQFSFLRAIRALANPTDRSAQEAAAFEFEVSDAAAEAQGRDA
CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEECHHHHHCCCCCC
QGVMVPMDVLMRAPLNTGSGGATAADTGGNTIANPLLTQSFIQMLRNRTILLQLATPLMG
CCEEEHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHH
LVGNPDIPTQEGGATGYWIGEDIEATEDLLSLGQRQFSPKTVAAYSEITRRTLKQSSLDI
HCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH
EALVRSDLALALATSLDFAGFYGTGANDQPLGIANTSGVNVVDFGGAASGGGSALPTWAE
HHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCHHHHH
VIQMESEISAANADVNSMAYVQNAKMRGHFKSTQKFSGTNGAPIWESDNTVNGYRGEVTN
HHHHHHHHHHCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QIKDGDVFHGDFANVLVGMWGGLDITVDPYTHSRRGRLRIVTMQDADYVLRHPAGLCFGT
CCCCCCEECCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCHHHHCCCCEEECC
DAS
CCC
>Mature Secondary Structure 
TREVTAEQINARGEGGAMRRMGEVREINVEARTVELAFSSTTPVRRWFGDEVLSHDAEA
CCCCCHHHHCCCCCCHHHHHHCCHHEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCHH
VVLDRLLDGGAVLVGHNWDDQVGVVQSARVDSDGVGRAVVRFGKSARASEIFQDIVDGIR
HHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH
QHVSVGYRVITISEEIREGQPNLITVTRWEPFEISVVPVPADPTVGIGRALENPPEAGGA
HHHHCCEEEEEEEHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCCCHHHCCCCCCCCC
DRGQTGEENAGAVAEPNDTGQRETQMKTIITRDAEGNLVRAKVDENDQIIEVIEVLERAG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCEEEEEECCCHHHHHHHHHHHHCC
AAETAMLSRLQEQEAARVRELTELGREYDAPELATEMIAGRHGVTDMRERLLDHLHQRSN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
ESRQISERSSIGLTDSETEQFSFLRAIRALANPTDRSAQEAAAFEFEVSDAAAEAQGRDA
CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEECHHHHHCCCCCC
QGVMVPMDVLMRAPLNTGSGGATAADTGGNTIANPLLTQSFIQMLRNRTILLQLATPLMG
CCEEEHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHH
LVGNPDIPTQEGGATGYWIGEDIEATEDLLSLGQRQFSPKTVAAYSEITRRTLKQSSLDI
HCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH
EALVRSDLALALATSLDFAGFYGTGANDQPLGIANTSGVNVVDFGGAASGGGSALPTWAE
HHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCHHHHH
VIQMESEISAANADVNSMAYVQNAKMRGHFKSTQKFSGTNGAPIWESDNTVNGYRGEVTN
HHHHHHHHHHCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QIKDGDVFHGDFANVLVGMWGGLDITVDPYTHSRRGRLRIVTMQDADYVLRHPAGLCFGT
CCCCCCEECCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCHHHHCCCCEEECC
DAS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA