Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081125

Identifier: 99081125

GI number: 99081125

Start: 1381659

End: 1382876

Strand: Reverse

Name: 99081125

Synonym: TM1040_1284

Alternate gene names: NA

Gene position: 1382876-1381659 (Counterclockwise)

Preceding gene: 99081126

Following gene: 99081124

Centisome position: 43.2

GC content: 60.18

Gene sequence:

>1218_bases
ATGGCTGGGTTTCTTCACGGCGTCGAGGTTCTCGAGATCGACACGGGTCCGCGCCCGATCCAAGCGATCCCGACCAGTGT
GATCGGTATTGTTGGGACTGCGCCTGCGGCTGACGAAACTGCCTTTCCGCTGAATACACCGGTACTGGTCGCAGGCAGCC
GCCTTGAGGCGGCAAAGCTCGACACCACCGACGACGGCACCGGCGGTGGAACGCTTCCTGCTGCGCTCGACGGGATCTTT
GACCAGATCGGCGCGGTTGTGATCGTTGTGCGCGTTGACGAGGGCGTCGATGAAGCAGCAACGCTCGCCAATGTGATCGG
CGGCGTGAATGCGACGGACGGGCAATTTGAGGGTGTGCATGCGCTGTCTGGTGCGGAGAGCGTCGTGGGGTTTGCACCGC
GCATCCTTATCGCCCCAGGTTGGACGCATCAGCGCCCAGAGGACGCAGGAAATCCCGGCTCCTATCTTGCGAACCCGGTG
GTCGCCGAGTTGGAAGGCATTGCTAACCGTATCGGCGCGGTGATCATCGCAGACGGGCCGAACACGACCGACGCAGATGC
ACACACTTACGCTGGCGATTGGGGCACTTCAGGTCGCATCTATGTCGTTGACCCTTGGGTGAAGGTTCTCGACAGCGCAG
GTGAGGTGGTCAATGAACCGGCCTCTGCCCGGGTTGCTGGTGTGATTGCCCGCACTGACAATGACGAAGGGTTTTGGGTA
TCGCCCTCAAATAAGGGTATTTTTGGAATAATCGGGACCTCGCGCCCGGTTGATTTCAAGCTGGGCGATCAGGCAAGCCG
AGCGAACCTGCTCAACAGCAATGACGTCGCTACGATCATCCGTCAGGACGGGTTCCGCCTTTGGGGGAACCGCGCGCCCA
CAGCCGATCCAAAGTGGCAATACCTCTGTGTGCGGCGCACCGCAGATGTGTTGAATGAAAGCATCCAGCGCACGCATCTT
TGGGCCGTGGACCGTGGGATTTCCAAGACCTACATCGAGGACGTGGTCGAAGGGGTGAACGCCTTTATCGCGGGGCTGGT
TGCGCAAGGTGCGATCCTCGGTGGTACGTGCTGGGCTGATCCGGATTTGAACACCCCCGAGAGCATTGCCAACGGGCAGG
TGTGGTTCAACTTTGACTTTACACCCGTGTACCCAGCCGAGCGGGTGACCTTCCGCTCTCACCTGACAAATGAGTACATC
ACGGAGGCGCTGGGCTAA

Upstream 100 bases:

>100_bases
GAATCTGACCCTCTGGCTATACCGAAGGAAAACCGCCAGAGGCGCTTATCGCTCGCGCTCGCGATGATTGCAGCAACATG
CAATTTGCAGCGAGGGTAAA

Downstream 100 bases:

>100_bases
TGTCTATTCGCAACATTCTGAAAAACTTCAATCTGTTCGTTGACGGGCGGGGCTTTGCTGGTGAGCTGGGCGACTACACC
CCGCCAAGCCCGTCTATCGC

Product: phage tail sheath protein

Products: NA

Alternate protein names: Tail Sheath Protein; Phage Tail Sheath Protein FI; Bacteriophage Tail Sheath Protein; Tail Sheath Protein FI; Phage Tail Sheath Protein; Phage-Related Tail Sheath Protein; Bacteriophage Tail Sheath Protein; LOW QUALITY PROTEIN Phage Tail Sheath Protein; Phage-Related Tail Protein; Phage TAIL SHEATH PROTEIN; Phage SPO1 DNA Polymerase-Related Protein; Phage Tail Sheath-Like Protein; Prophage; Prophage Tail Sheath; Phage P2 Tail Sheath FI-Like Protein; Phage Tail Sheath Family Protein; Phage Tail-Like Protein; Tail Sheath Protein Bacteriophage; Bacteriophage P2 Tail Sheath Protein GPFI; Phage Tail Sheath Protein FI-Like Protein; Pyocin R2_PP Tail Sheath Protein GpFI; Pyocin R2_PP Tail Sheath Protein; Bacteriophage Tail Sheath Protein FI; Phage-Related Tail Sheath Protein; Bacteriophage P2 Tail Sheath Protein; Bacteriophage Contractile Tail Sheath Protein

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MAGFLHGVEVLEIDTGPRPIQAIPTSVIGIVGTAPAADETAFPLNTPVLVAGSRLEAAKLDTTDDGTGGGTLPAALDGIF
DQIGAVVIVVRVDEGVDEAATLANVIGGVNATDGQFEGVHALSGAESVVGFAPRILIAPGWTHQRPEDAGNPGSYLANPV
VAELEGIANRIGAVIIADGPNTTDADAHTYAGDWGTSGRIYVVDPWVKVLDSAGEVVNEPASARVAGVIARTDNDEGFWV
SPSNKGIFGIIGTSRPVDFKLGDQASRANLLNSNDVATIIRQDGFRLWGNRAPTADPKWQYLCVRRTADVLNESIQRTHL
WAVDRGISKTYIEDVVEGVNAFIAGLVAQGAILGGTCWADPDLNTPESIANGQVWFNFDFTPVYPAERVTFRSHLTNEYI
TEALG

Sequences:

>Translated_405_residues
MAGFLHGVEVLEIDTGPRPIQAIPTSVIGIVGTAPAADETAFPLNTPVLVAGSRLEAAKLDTTDDGTGGGTLPAALDGIF
DQIGAVVIVVRVDEGVDEAATLANVIGGVNATDGQFEGVHALSGAESVVGFAPRILIAPGWTHQRPEDAGNPGSYLANPV
VAELEGIANRIGAVIIADGPNTTDADAHTYAGDWGTSGRIYVVDPWVKVLDSAGEVVNEPASARVAGVIARTDNDEGFWV
SPSNKGIFGIIGTSRPVDFKLGDQASRANLLNSNDVATIIRQDGFRLWGNRAPTADPKWQYLCVRRTADVLNESIQRTHL
WAVDRGISKTYIEDVVEGVNAFIAGLVAQGAILGGTCWADPDLNTPESIANGQVWFNFDFTPVYPAERVTFRSHLTNEYI
TEALG
>Mature_404_residues
AGFLHGVEVLEIDTGPRPIQAIPTSVIGIVGTAPAADETAFPLNTPVLVAGSRLEAAKLDTTDDGTGGGTLPAALDGIFD
QIGAVVIVVRVDEGVDEAATLANVIGGVNATDGQFEGVHALSGAESVVGFAPRILIAPGWTHQRPEDAGNPGSYLANPVV
AELEGIANRIGAVIIADGPNTTDADAHTYAGDWGTSGRIYVVDPWVKVLDSAGEVVNEPASARVAGVIARTDNDEGFWVS
PSNKGIFGIIGTSRPVDFKLGDQASRANLLNSNDVATIIRQDGFRLWGNRAPTADPKWQYLCVRRTADVLNESIQRTHLW
AVDRGISKTYIEDVVEGVNAFIAGLVAQGAILGGTCWADPDLNTPESIANGQVWFNFDFTPVYPAERVTFRSHLTNEYIT
EALG

Specific function: Unknown

COG id: COG3497

COG function: function code R; Phage tail sheath protein FI

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42662; Mature: 42531

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGFLHGVEVLEIDTGPRPIQAIPTSVIGIVGTAPAADETAFPLNTPVLVAGSRLEAAKL
CCCCCCCCEEEEECCCCCCHHHCCHHHHHEEECCCCCCCCCCCCCCCEEEECCCCCEEEC
DTTDDGTGGGTLPAALDGIFDQIGAVVIVVRVDEGVDEAATLANVIGGVNATDGQFEGVH
CCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEE
ALSGAESVVGFAPRILIAPGWTHQRPEDAGNPGSYLANPVVAELEGIANRIGAVIIADGP
HHCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCEEEEECCC
NTTDADAHTYAGDWGTSGRIYVVDPWVKVLDSAGEVVNEPASARVAGVIARTDNDEGFWV
CCCCCCCCEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEE
SPSNKGIFGIIGTSRPVDFKLGDQASRANLLNSNDVATIIRQDGFRLWGNRAPTADPKWQ
CCCCCCEEEEECCCCCCEEEECCCHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCEE
YLCVRRTADVLNESIQRTHLWAVDRGISKTYIEDVVEGVNAFIAGLVAQGAILGGTCWAD
EEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCEEECC
PDLNTPESIANGQVWFNFDFTPVYPAERVTFRSHLTNEYITEALG
CCCCCCHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGFLHGVEVLEIDTGPRPIQAIPTSVIGIVGTAPAADETAFPLNTPVLVAGSRLEAAKL
CCCCCCCEEEEECCCCCCHHHCCHHHHHEEECCCCCCCCCCCCCCCEEEECCCCCEEEC
DTTDDGTGGGTLPAALDGIFDQIGAVVIVVRVDEGVDEAATLANVIGGVNATDGQFEGVH
CCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEE
ALSGAESVVGFAPRILIAPGWTHQRPEDAGNPGSYLANPVVAELEGIANRIGAVIIADGP
HHCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCEEEEECCC
NTTDADAHTYAGDWGTSGRIYVVDPWVKVLDSAGEVVNEPASARVAGVIARTDNDEGFWV
CCCCCCCCEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEE
SPSNKGIFGIIGTSRPVDFKLGDQASRANLLNSNDVATIIRQDGFRLWGNRAPTADPKWQ
CCCCCCEEEEECCCCCCEEEECCCHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCEE
YLCVRRTADVLNESIQRTHLWAVDRGISKTYIEDVVEGVNAFIAGLVAQGAILGGTCWAD
EEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCEEECC
PDLNTPESIANGQVWFNFDFTPVYPAERVTFRSHLTNEYITEALG
CCCCCCHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA