| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081080
Identifier: 99081080
GI number: 99081080
Start: 1334517
End: 1335170
Strand: Reverse
Name: 99081080
Synonym: TM1040_1239
Alternate gene names: NA
Gene position: 1335170-1334517 (Counterclockwise)
Preceding gene: 99081091
Following gene: 99081079
Centisome position: 41.71
GC content: 58.1
Gene sequence:
>654_bases ATGCCTGAGGTCATTTTCCCCGGACCCGAAGGACGCCTGGAAGGCCGTTATCACCCGCAAAAGGAAAAGGATGCGCCGAT CGCGATCGTGTTGCACCCGCATCCGCAGTTCGGCGGCACAATGAACAACAAGGTGGTCTACAACCTCCATTATGCCTTCT ACAACATGGGCTTTACCGTTTTGCGGTTCAATTTCCGTGGTGTGGGTCGCTCGCAAGGCGAATATGATCAAGGGGTGGGC GAACTCTCGGATGCCGCCTCCGCGCTGGATTATCTGCAGTCGATGAACAACAACTCCAAGCACTGCTGGGTTGCGGGATT CTCCTTTGGGGCCTGGATCGGCATGCAGCTGCTGATGCGCCGTCCGGAGATCACCGGATTTATCTCTGTCGCGCCGCCTG CCAATATGTATGATTTCTCCTTCCTGGCGCCCTGCCCGTCTTCTGGTCTGATCATCAACGGCACCGCCGACCGCGTGGCG CCGCCTGCGGACACCGTGGGGCTGGTGAACAAGCTGCACGAGCAGAAGGGCATCACCATCACCCACGAAGAAGTCGAAGG CGCGGATCATTTCTTCCAGGAGCCGCATATGGACACGATGATCGGCAGCGTGACCGATTATGTGAAGCGACGCCTGACAG AGAACACCCGCTGA
Upstream 100 bases:
>100_bases CACCTGCGCCTCTTTAGAACAGTTCTAAGGTGCCGGATAAAATTCGTCAAGTATTTGTCTCCGCCACCTCGCCAAGAAGC AGAGTAGGATTAACCCACCC
Downstream 100 bases:
>100_bases TGGGGACGCTGGACACACTGGCTGCAAAGCTGGCGGAGGACACCCTCAAGGTCCAAGATGCGCTCGGCGAAGATCGCATC TACATGGAGATCGCCCAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MPEVIFPGPEGRLEGRYHPQKEKDAPIAIVLHPHPQFGGTMNNKVVYNLHYAFYNMGFTVLRFNFRGVGRSQGEYDQGVG ELSDAASALDYLQSMNNNSKHCWVAGFSFGAWIGMQLLMRRPEITGFISVAPPANMYDFSFLAPCPSSGLIINGTADRVA PPADTVGLVNKLHEQKGITITHEEVEGADHFFQEPHMDTMIGSVTDYVKRRLTENTR
Sequences:
>Translated_217_residues MPEVIFPGPEGRLEGRYHPQKEKDAPIAIVLHPHPQFGGTMNNKVVYNLHYAFYNMGFTVLRFNFRGVGRSQGEYDQGVG ELSDAASALDYLQSMNNNSKHCWVAGFSFGAWIGMQLLMRRPEITGFISVAPPANMYDFSFLAPCPSSGLIINGTADRVA PPADTVGLVNKLHEQKGITITHEEVEGADHFFQEPHMDTMIGSVTDYVKRRLTENTR >Mature_216_residues PEVIFPGPEGRLEGRYHPQKEKDAPIAIVLHPHPQFGGTMNNKVVYNLHYAFYNMGFTVLRFNFRGVGRSQGEYDQGVGE LSDAASALDYLQSMNNNSKHCWVAGFSFGAWIGMQLLMRRPEITGFISVAPPANMYDFSFLAPCPSSGLIINGTADRVAP PADTVGLVNKLHEQKGITITHEEVEGADHFFQEPHMDTMIGSVTDYVKRRLTENTR
Specific function: Unknown
COG id: COG2945
COG function: function code R; Predicted hydrolase of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000383 [H]
Pfam domain/function: PF02129 Peptidase_S15 [H]
EC number: NA
Molecular weight: Translated: 24177; Mature: 24046
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEVIFPGPEGRLEGRYHPQKEKDAPIAIVLHPHPQFGGTMNNKVVYNLHYAFYNMGFTV CCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEHHHHCCEEE LRFNFRGVGRSQGEYDQGVGELSDAASALDYLQSMNNNSKHCWVAGFSFGAWIGMQLLMR EEEEECCCCCCCCCHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH RPEITGFISVAPPANMYDFSFLAPCPSSGLIINGTADRVAPPADTVGLVNKLHEQKGITI CCCCCEEEEECCCCCCCCCEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEE THEEVEGADHFFQEPHMDTMIGSVTDYVKRRLTENTR EHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PEVIFPGPEGRLEGRYHPQKEKDAPIAIVLHPHPQFGGTMNNKVVYNLHYAFYNMGFTV CCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEHHHHCCEEE LRFNFRGVGRSQGEYDQGVGELSDAASALDYLQSMNNNSKHCWVAGFSFGAWIGMQLLMR EEEEECCCCCCCCCHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH RPEITGFISVAPPANMYDFSFLAPCPSSGLIINGTADRVAPPADTVGLVNKLHEQKGITI CCCCCEEEEECCCCCCCCCEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEE THEEVEGADHFFQEPHMDTMIGSVTDYVKRRLTENTR EHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]