| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081047
Identifier: 99081047
GI number: 99081047
Start: 1296378
End: 1296974
Strand: Reverse
Name: 99081047
Synonym: TM1040_1206
Alternate gene names: NA
Gene position: 1296974-1296378 (Counterclockwise)
Preceding gene: 99081053
Following gene: 99081024
Centisome position: 40.52
GC content: 59.46
Gene sequence:
>597_bases ATGAGTGTAGATAACGCCAATCTGGCCGCATTGGTAGGCTCACGCATATGTCACGACCTGATCAGCCCGGTGGGCGCGAT CAACAACGGTCTGGAATTGCTCGGCATGTCCAATTCGCTCGAGGGGCCGGAGCTTGAACTGATTTCGGACAGTGTGAACA ATGCCAACGCCCGCATTCGTTTCTTTCGTGTCGCTTTTGGCGCCGCCGGCGAACAAGAGCTGGGCCGGATGGAAATCATG AGCGTGCTGAGCGACGTCAGCAAAGGCGGGCGGATCAAATACAACTGGTCGTCTCAGGACTCGGCTGCGCGCCGCGATGT ACGAATGGCGTTTCTGGCGGGGCTCTGTCTCGAAAGCGCGCTGCCCTATGGCGGCACTGTCCAGATCCTGCGCAGCACCG ACGGCTGGACCGTCACCGGCGAAGGGCGCAAAATCAACTTGGACGAGACGCTCTGGTCTGGTCTGGTGGCAGACACCACA CCTGCGGAAATCACGCCAGCACTGGTGCAATTTGCACTGCTGCCCGCCGCGGCCAAAGAAGCCGGCTACACGCTGGCCTT CAACCAGACTGCGGAGAAGATCTCGATCAGCTTCTAA
Upstream 100 bases:
>100_bases AGCCCCCAATCCGGGTGGTCGGGATGACGGACAAACATGCCGGGTGCCAGGATCGCATTCAGGTCATTCATCGCTTGGGT GGCCCTATTGGAGGAAAGTT
Downstream 100 bases:
>100_bases TCATGTCGCCATACCTATGAAAAACGCCGCTGATCTCTCAGCGGCGTTTTTGCGTTTCAGCAAGGCGTCACATCCGTCAC GCAGGTCAGGCGCGCACGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MSVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIRFFRVAFGAAGEQELGRMEIM SVLSDVSKGGRIKYNWSSQDSAARRDVRMAFLAGLCLESALPYGGTVQILRSTDGWTVTGEGRKINLDETLWSGLVADTT PAEITPALVQFALLPAAAKEAGYTLAFNQTAEKISISF
Sequences:
>Translated_198_residues MSVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIRFFRVAFGAAGEQELGRMEIM SVLSDVSKGGRIKYNWSSQDSAARRDVRMAFLAGLCLESALPYGGTVQILRSTDGWTVTGEGRKINLDETLWSGLVADTT PAEITPALVQFALLPAAAKEAGYTLAFNQTAEKISISF >Mature_197_residues SVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIRFFRVAFGAAGEQELGRMEIMS VLSDVSKGGRIKYNWSSQDSAARRDVRMAFLAGLCLESALPYGGTVQILRSTDGWTVTGEGRKINLDETLWSGLVADTTP AEITPALVQFALLPAAAKEAGYTLAFNQTAEKISISF
Specific function: Unknown
COG id: COG5385
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21109; Mature: 20978
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIR CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCCCCCEEE FFRVAFGAAGEQELGRMEIMSVLSDVSKGGRIKYNWSSQDSAARRDVRMAFLAGLCLESA EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC LPYGGTVQILRSTDGWTVTGEGRKINLDETLWSGLVADTTPAEITPALVQFALLPAAAKE CCCCCEEEEEECCCCEEEECCCCEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH AGYTLAFNQTAEKISISF CCEEEEECCCCCEEEECC >Mature Secondary Structure SVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIR CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCCCCCEEE FFRVAFGAAGEQELGRMEIMSVLSDVSKGGRIKYNWSSQDSAARRDVRMAFLAGLCLESA EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC LPYGGTVQILRSTDGWTVTGEGRKINLDETLWSGLVADTTPAEITPALVQFALLPAAAKE CCCCCEEEEEECCCCEEEECCCCEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH AGYTLAFNQTAEKISISF CCEEEEECCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA