Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081047

Identifier: 99081047

GI number: 99081047

Start: 1296378

End: 1296974

Strand: Reverse

Name: 99081047

Synonym: TM1040_1206

Alternate gene names: NA

Gene position: 1296974-1296378 (Counterclockwise)

Preceding gene: 99081053

Following gene: 99081024

Centisome position: 40.52

GC content: 59.46

Gene sequence:

>597_bases
ATGAGTGTAGATAACGCCAATCTGGCCGCATTGGTAGGCTCACGCATATGTCACGACCTGATCAGCCCGGTGGGCGCGAT
CAACAACGGTCTGGAATTGCTCGGCATGTCCAATTCGCTCGAGGGGCCGGAGCTTGAACTGATTTCGGACAGTGTGAACA
ATGCCAACGCCCGCATTCGTTTCTTTCGTGTCGCTTTTGGCGCCGCCGGCGAACAAGAGCTGGGCCGGATGGAAATCATG
AGCGTGCTGAGCGACGTCAGCAAAGGCGGGCGGATCAAATACAACTGGTCGTCTCAGGACTCGGCTGCGCGCCGCGATGT
ACGAATGGCGTTTCTGGCGGGGCTCTGTCTCGAAAGCGCGCTGCCCTATGGCGGCACTGTCCAGATCCTGCGCAGCACCG
ACGGCTGGACCGTCACCGGCGAAGGGCGCAAAATCAACTTGGACGAGACGCTCTGGTCTGGTCTGGTGGCAGACACCACA
CCTGCGGAAATCACGCCAGCACTGGTGCAATTTGCACTGCTGCCCGCCGCGGCCAAAGAAGCCGGCTACACGCTGGCCTT
CAACCAGACTGCGGAGAAGATCTCGATCAGCTTCTAA

Upstream 100 bases:

>100_bases
AGCCCCCAATCCGGGTGGTCGGGATGACGGACAAACATGCCGGGTGCCAGGATCGCATTCAGGTCATTCATCGCTTGGGT
GGCCCTATTGGAGGAAAGTT

Downstream 100 bases:

>100_bases
TCATGTCGCCATACCTATGAAAAACGCCGCTGATCTCTCAGCGGCGTTTTTGCGTTTCAGCAAGGCGTCACATCCGTCAC
GCAGGTCAGGCGCGCACGGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MSVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIRFFRVAFGAAGEQELGRMEIM
SVLSDVSKGGRIKYNWSSQDSAARRDVRMAFLAGLCLESALPYGGTVQILRSTDGWTVTGEGRKINLDETLWSGLVADTT
PAEITPALVQFALLPAAAKEAGYTLAFNQTAEKISISF

Sequences:

>Translated_198_residues
MSVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIRFFRVAFGAAGEQELGRMEIM
SVLSDVSKGGRIKYNWSSQDSAARRDVRMAFLAGLCLESALPYGGTVQILRSTDGWTVTGEGRKINLDETLWSGLVADTT
PAEITPALVQFALLPAAAKEAGYTLAFNQTAEKISISF
>Mature_197_residues
SVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIRFFRVAFGAAGEQELGRMEIMS
VLSDVSKGGRIKYNWSSQDSAARRDVRMAFLAGLCLESALPYGGTVQILRSTDGWTVTGEGRKINLDETLWSGLVADTTP
AEITPALVQFALLPAAAKEAGYTLAFNQTAEKISISF

Specific function: Unknown

COG id: COG5385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21109; Mature: 20978

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCCCCCEEE
FFRVAFGAAGEQELGRMEIMSVLSDVSKGGRIKYNWSSQDSAARRDVRMAFLAGLCLESA
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
LPYGGTVQILRSTDGWTVTGEGRKINLDETLWSGLVADTTPAEITPALVQFALLPAAAKE
CCCCCEEEEEECCCCEEEECCCCEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AGYTLAFNQTAEKISISF
CCEEEEECCCCCEEEECC
>Mature Secondary Structure 
SVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIR
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCCCCCEEE
FFRVAFGAAGEQELGRMEIMSVLSDVSKGGRIKYNWSSQDSAARRDVRMAFLAGLCLESA
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
LPYGGTVQILRSTDGWTVTGEGRKINLDETLWSGLVADTTPAEITPALVQFALLPAAAKE
CCCCCEEEEEECCCCEEEECCCCEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AGYTLAFNQTAEKISISF
CCEEEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA