| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is proB
Identifier: 99081045
GI number: 99081045
Start: 1293829
End: 1294935
Strand: Direct
Name: proB
Synonym: TM1040_1204
Alternate gene names: 99081045
Gene position: 1293829-1294935 (Clockwise)
Preceding gene: 99081044
Following gene: 99081046
Centisome position: 40.42
GC content: 64.77
Gene sequence:
>1107_bases TTGGCAGCCCTAAGCACGGCGCGGCGCGTCGTCATCAAGATCGGCTCCGCCCTTTTGGTGGATCGCACCAGCAGTGCCTT GCGGCAGGAGTGGCTCCTGTCGCTGGCAGAGGATGTGGCCCGCCTGAAAAAACAGGGCAAGGATGTGATCCTCGTGTCCT CGGGCTCGATTGCGCTGGGGCGCGGTGCCCTGGGCCTGCCGCGCAAGGATCTGCCGCTTGAACAGTCACAGGCCGCCGCA GCTGTGGGCCAGATCCGGCTTGCGCGCGCTTATGAGGAGGCCCTGGCGCCGCATGGGATCACCACGGCGCAGGTGCTTGT AACGCTGGAGGACAGCGAAAACCGCCGCCGTTACCTCAATTCCCGCGCCACGCTCGAGACTTTGATCGGTCTGGGCGCGG TGCCCATCGTCAATGAGAACGATACCATCGCCACCGACGAGATCCGCTATGGCGACAACGACCGTCTGGCGGCCCAGGTC GCGGTGACGGTGGGGGCCGATGTGCTGATCCTGTTGTCGGATGTGGACGGGTTCTACAGCGCCAATCCTGCGCTTGATCC AGACGCCAAACGGTTTGACCGGATCGAACAGATCACGCCCGAGATCGAGGCAATGGCGGGCGATGGGGTCTCGGGGCTGT CCAAAGGCGGCATGATCACCAAGCTCTTGGCGGCCAAGATGGCCACCGCCGCAGGCTGCGCCATGGCAATCTCCGAAGGA TCGGTGATGTCGCCGGTTTCGGCACTTGAGGCTGGGGCTGCTTCGACGTGGTTCACAGCCCAAGGTGACCCGCAGGTCGC GCGCAAACGCTGGATCGCCGCGATGAAAACCCGCGGCGTGATCACCGTGGATGAAGGTGCGGCCAAGGCGCTGCACAACG GAAACAGTCTGCTGCCCGCAGGGGTGCGTCATGTGGAGGGTGACTTTGGCCGCGGAGATCCGCTGGCCATCCTCGGCCCA GATGGCCGTAAGCTGGGGCAGGGGCTGAGCCGCTACACGGCCGAGGAAGCCCGCGCCCTTCAGGGACATCGTTCGGATGA GATCGAGGCGATCCTCGGCTATGCTGGACGTGCGGCCCTGATCCACCGGGATGACATGGCGCTTTGA
Upstream 100 bases:
>100_bases GGGAAGGTCTGGATCTGGTCCTGCGTGCGGTGCGCGCCGAGATCGATGATGACCGCCTTCGGATCAAACAGGCGGAGGCG TCCGAGGAGGAGGACACCCC
Downstream 100 bases:
>100_bases TCCTGTCATTCTGGCGCTAAGAAGACGTCCTGCCGGCGCGTGATGTGGCGGTATGGCTCGCACCCCGCCTGGGGAAGAAA AGGGCAAAGACATGAAAGAT
Product: gamma-glutamyl kinase
Products: NA
Alternate protein names: Gamma-glutamyl kinase; GK
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MAALSTARRVVIKIGSALLVDRTSSALRQEWLLSLAEDVARLKKQGKDVILVSSGSIALGRGALGLPRKDLPLEQSQAAA AVGQIRLARAYEEALAPHGITTAQVLVTLEDSENRRRYLNSRATLETLIGLGAVPIVNENDTIATDEIRYGDNDRLAAQV AVTVGADVLILLSDVDGFYSANPALDPDAKRFDRIEQITPEIEAMAGDGVSGLSKGGMITKLLAAKMATAAGCAMAISEG SVMSPVSALEAGAASTWFTAQGDPQVARKRWIAAMKTRGVITVDEGAAKALHNGNSLLPAGVRHVEGDFGRGDPLAILGP DGRKLGQGLSRYTAEEARALQGHRSDEIEAILGYAGRAALIHRDDMAL
Sequences:
>Translated_368_residues MAALSTARRVVIKIGSALLVDRTSSALRQEWLLSLAEDVARLKKQGKDVILVSSGSIALGRGALGLPRKDLPLEQSQAAA AVGQIRLARAYEEALAPHGITTAQVLVTLEDSENRRRYLNSRATLETLIGLGAVPIVNENDTIATDEIRYGDNDRLAAQV AVTVGADVLILLSDVDGFYSANPALDPDAKRFDRIEQITPEIEAMAGDGVSGLSKGGMITKLLAAKMATAAGCAMAISEG SVMSPVSALEAGAASTWFTAQGDPQVARKRWIAAMKTRGVITVDEGAAKALHNGNSLLPAGVRHVEGDFGRGDPLAILGP DGRKLGQGLSRYTAEEARALQGHRSDEIEAILGYAGRAALIHRDDMAL >Mature_367_residues AALSTARRVVIKIGSALLVDRTSSALRQEWLLSLAEDVARLKKQGKDVILVSSGSIALGRGALGLPRKDLPLEQSQAAAA VGQIRLARAYEEALAPHGITTAQVLVTLEDSENRRRYLNSRATLETLIGLGAVPIVNENDTIATDEIRYGDNDRLAAQVA VTVGADVLILLSDVDGFYSANPALDPDAKRFDRIEQITPEIEAMAGDGVSGLSKGGMITKLLAAKMATAAGCAMAISEGS VMSPVSALEAGAASTWFTAQGDPQVARKRWIAAMKTRGVITVDEGAAKALHNGNSLLPAGVRHVEGDFGRGDPLAILGPD GRKLGQGLSRYTAEEARALQGHRSDEIEAILGYAGRAALIHRDDMAL
Specific function: Catalyzes the transfer of a phosphate group to glutamate to form glutamate 5-phosphate which rapidly cyclizes to 5- oxoproline
COG id: COG0263
COG function: function code E; Glutamate 5-kinase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PUA domain
Homologues:
Organism=Homo sapiens, GI21361368, Length=270, Percent_Identity=31.4814814814815, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI62912457, Length=268, Percent_Identity=31.7164179104478, Blast_Score=114, Evalue=2e-25, Organism=Escherichia coli, GI1786437, Length=365, Percent_Identity=41.9178082191781, Blast_Score=267, Evalue=7e-73, Organism=Caenorhabditis elegans, GI17569967, Length=310, Percent_Identity=32.258064516129, Blast_Score=125, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17569969, Length=310, Percent_Identity=32.258064516129, Blast_Score=125, Evalue=4e-29, Organism=Saccharomyces cerevisiae, GI6321822, Length=420, Percent_Identity=32.1428571428571, Blast_Score=187, Evalue=3e-48, Organism=Saccharomyces cerevisiae, GI6320506, Length=420, Percent_Identity=31.6666666666667, Blast_Score=187, Evalue=3e-48, Organism=Drosophila melanogaster, GI21357643, Length=288, Percent_Identity=32.9861111111111, Blast_Score=117, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PROB_SILST (Q1GHC9)
Other databases:
- EMBL: CP000377 - RefSeq: YP_613199.1 - ProteinModelPortal: Q1GHC9 - SMR: Q1GHC9 - STRING: Q1GHC9 - GeneID: 4076339 - GenomeReviews: CP000377_GR - KEGG: sit:TM1040_1204 - NMPDR: fig|292414.1.peg.3664 - eggNOG: COG0263 - HOGENOM: HBG507643 - OMA: TFGDNDM - PhylomeDB: Q1GHC9 - ProtClustDB: PRK05429 - BioCyc: SSP292414:TM1040_1204-MONOMER - GO: GO:0005737 - HAMAP: MF_00456 - InterPro: IPR001048 - InterPro: IPR001057 - InterPro: IPR011529 - InterPro: IPR005715 - InterPro: IPR019797 - InterPro: IPR002478 - InterPro: IPR015947 - Gene3D: G3DSA:3.40.1160.10 - PIRSF: PIRSF000729 - PRINTS: PR00474 - SMART: SM00359 - TIGRFAMs: TIGR01027
Pfam domain/function: PF00696 AA_kinase; PF01472 PUA; SSF53633 Aa_kinase; SSF88697 PUA-like
EC number: =2.7.2.11
Molecular weight: Translated: 38733; Mature: 38601
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: PS00902 GLUTAMATE_5_KINASE; PS50890 PUA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALSTARRVVIKIGSALLVDRTSSALRQEWLLSLAEDVARLKKQGKDVILVSSGSIALG CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEC RGALGLPRKDLPLEQSQAAAAVGQIRLARAYEEALAPHGITTAQVLVTLEDSENRRRYLN CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHH SRATLETLIGLGAVPIVNENDTIATDEIRYGDNDRLAAQVAVTVGADVLILLSDVDGFYS HHHHHHHHHCCCCCEEECCCCCEECCCEEECCCCCEEEEEEEEECCCEEEEEECCCCCCC ANPALDPDAKRFDRIEQITPEIEAMAGDGVSGLSKGGMITKLLAAKMATAAGCAMAISEG CCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCC SVMSPVSALEAGAASTWFTAQGDPQVARKRWIAAMKTRGVITVDEGAAKALHNGNSLLPA CCCCHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCCCCC GVRHVEGDFGRGDPLAILGPDGRKLGQGLSRYTAEEARALQGHRSDEIEAILGYAGRAAL CHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEE IHRDDMAL EECCCCCC >Mature Secondary Structure AALSTARRVVIKIGSALLVDRTSSALRQEWLLSLAEDVARLKKQGKDVILVSSGSIALG CCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEC RGALGLPRKDLPLEQSQAAAAVGQIRLARAYEEALAPHGITTAQVLVTLEDSENRRRYLN CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHH SRATLETLIGLGAVPIVNENDTIATDEIRYGDNDRLAAQVAVTVGADVLILLSDVDGFYS HHHHHHHHHCCCCCEEECCCCCEECCCEEECCCCCEEEEEEEEECCCEEEEEECCCCCCC ANPALDPDAKRFDRIEQITPEIEAMAGDGVSGLSKGGMITKLLAAKMATAAGCAMAISEG CCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCC SVMSPVSALEAGAASTWFTAQGDPQVARKRWIAAMKTRGVITVDEGAAKALHNGNSLLPA CCCCHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCCCCC GVRHVEGDFGRGDPLAILGPDGRKLGQGLSRYTAEEARALQGHRSDEIEAILGYAGRAAL CHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEE IHRDDMAL EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA