| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081017
Identifier: 99081017
GI number: 99081017
Start: 1265730
End: 1266737
Strand: Reverse
Name: 99081017
Synonym: TM1040_1176
Alternate gene names: NA
Gene position: 1266737-1265730 (Counterclockwise)
Preceding gene: 99081018
Following gene: 99081015
Centisome position: 39.57
GC content: 63.39
Gene sequence:
>1008_bases ATGCCGCTTGGCGCTCTCGCGCAGGGCTTTGCCAATCTCGGCACCGAGGCCACCGGCTTTGCGGTGCCAGAGCGCGGTGT CGCCTTGAGGTTTCCCGAAGATCACGCCGCCCACCCCGAATATCGCATCGAATGGTGGTATCTCACCGCAAACCTGCGCA CCGCCGAGGGCGCGGATCTCGGTATCCAATGGACCCTGTTTCGCTCGGCGCTTGCCCCGGAAGAGCGCGCAGGCTGGCAA AGCCCACAAATCTGGATGGGACATGCCGCCCTCACCACAGCGACCACTCACCGCTTTGCAGAACGTATCGGGCGCGGTGG CACGGGTCAGGCGGGTGTCTCGGCAGCACCGTTTTCCGCCTGGATCGACGATTGGGAGATGACCTCACCGGACGCAAGCT TGGAGAAACTCACGCTCACGGCCCGGGGGCAGGATTTTTCCTATGATCTGGATCTTGCCGCAGATGCGCCGCTGATCTTG CATGGGGATGCGGGCTACTCGGTGAAATCAGCCGACGGACAGGCCAGCTATTATTACGCCCAGCCTGCCTATGAGGTCCA AGGCACCGTGACCCTGCCCGAAGGCCCGGTCAACGTCACCGGTTCAGCCTGGCTCGACCGGGAATGGTCGAGCCAGCCGC TTGCAGAGGACCAGACCGGTTGGGACTGGTTCTCCTTGCGTCTTGACGATGGCGCCAAGCTGATGGGCTTTGTCCTGCGT GGAGACCGGGGAGATTTCACCTCCGGGACATGGATCTCACCGGACGGGACAGCTCACCCGCTCTCGCCCGGCGCTTTTCA GGCCACGCCCCAAGACTGGTCAGAGGTGGCCGGGCGTAGCCTTCCAACCACATGGCAGGTTTCCCTGCCCGAGCGCGACA TCGACATCCGCGTGCGCGCGCTCAACCCAAAGGCCTGGATGGGAACGCGTTTTTCCTATTGGGAAGGCCCCATTCTGATC TCCGGGAGCCACGGCGGCAGCGGGTATCTGGAGATGACGGGCTACTGA
Upstream 100 bases:
>100_bases GGAGTATTTGCAAGTGATCGCTAGCCTTTCTCGCGTTTCCTCTTTGCTAACAGACGCAGGCATAGGCCTTTGTCTGTGTC TATGTCTCTGGGCCGGGCTC
Downstream 100 bases:
>100_bases CCGTCGCGCTCCAGCAGATCCGACGCACGATAATAGGCACGCGCCGCGCGATGGATCGGGGCCGTCTGCCCGTTTTGAAC CATAGGTCCGGCCTCCAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Hydrolase; Hydrolase; Lipoprotein; ABC Transporter Type C Secreted Protein; Hydroxyneurosporene Synthase; ABC Transporter Lipoprotein; Secreted Hydrolase-Like; Twin-Arginine Translocation Pathway Signal; ABC-Type Transport System Hydrolase Component; Signal Peptide; Attachment Protein; Hydroxymethylglutaryl-Co A Reductase
Number of amino acids: Translated: 335; Mature: 334
Protein sequence:
>335_residues MPLGALAQGFANLGTEATGFAVPERGVALRFPEDHAAHPEYRIEWWYLTANLRTAEGADLGIQWTLFRSALAPEERAGWQ SPQIWMGHAALTTATTHRFAERIGRGGTGQAGVSAAPFSAWIDDWEMTSPDASLEKLTLTARGQDFSYDLDLAADAPLIL HGDAGYSVKSADGQASYYYAQPAYEVQGTVTLPEGPVNVTGSAWLDREWSSQPLAEDQTGWDWFSLRLDDGAKLMGFVLR GDRGDFTSGTWISPDGTAHPLSPGAFQATPQDWSEVAGRSLPTTWQVSLPERDIDIRVRALNPKAWMGTRFSYWEGPILI SGSHGGSGYLEMTGY
Sequences:
>Translated_335_residues MPLGALAQGFANLGTEATGFAVPERGVALRFPEDHAAHPEYRIEWWYLTANLRTAEGADLGIQWTLFRSALAPEERAGWQ SPQIWMGHAALTTATTHRFAERIGRGGTGQAGVSAAPFSAWIDDWEMTSPDASLEKLTLTARGQDFSYDLDLAADAPLIL HGDAGYSVKSADGQASYYYAQPAYEVQGTVTLPEGPVNVTGSAWLDREWSSQPLAEDQTGWDWFSLRLDDGAKLMGFVLR GDRGDFTSGTWISPDGTAHPLSPGAFQATPQDWSEVAGRSLPTTWQVSLPERDIDIRVRALNPKAWMGTRFSYWEGPILI SGSHGGSGYLEMTGY >Mature_334_residues PLGALAQGFANLGTEATGFAVPERGVALRFPEDHAAHPEYRIEWWYLTANLRTAEGADLGIQWTLFRSALAPEERAGWQS PQIWMGHAALTTATTHRFAERIGRGGTGQAGVSAAPFSAWIDDWEMTSPDASLEKLTLTARGQDFSYDLDLAADAPLILH GDAGYSVKSADGQASYYYAQPAYEVQGTVTLPEGPVNVTGSAWLDREWSSQPLAEDQTGWDWFSLRLDDGAKLMGFVLRG DRGDFTSGTWISPDGTAHPLSPGAFQATPQDWSEVAGRSLPTTWQVSLPERDIDIRVRALNPKAWMGTRFSYWEGPILIS GSHGGSGYLEMTGY
Specific function: Unknown
COG id: COG5621
COG function: function code R; Predicted secreted hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36533; Mature: 36401
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLGALAQGFANLGTEATGFAVPERGVALRFPEDHAAHPEYRIEWWYLTANLRTAEGADL CCHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCCC GIQWTLFRSALAPEERAGWQSPQIWMGHAALTTATTHRFAERIGRGGTGQAGVSAAPFSA CEEEEEHHHHCCCHHHCCCCCCCEEECCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCHHH WIDDWEMTSPDASLEKLTLTARGQDFSYDLDLAADAPLILHGDAGYSVKSADGQASYYYA HCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEECCCCCEEEEEE QPAYEVQGTVTLPEGPVNVTGSAWLDREWSSQPLAEDQTGWDWFSLRLDDGAKLMGFVLR CCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE GDRGDFTSGTWISPDGTAHPLSPGAFQATPQDWSEVAGRSLPTTWQVSLPERDIDIRVRA CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCEEEEEE LNPKAWMGTRFSYWEGPILISGSHGGSGYLEMTGY ECCCHHCCCCEEECCCCEEEECCCCCCCEEEECCC >Mature Secondary Structure PLGALAQGFANLGTEATGFAVPERGVALRFPEDHAAHPEYRIEWWYLTANLRTAEGADL CHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCCC GIQWTLFRSALAPEERAGWQSPQIWMGHAALTTATTHRFAERIGRGGTGQAGVSAAPFSA CEEEEEHHHHCCCHHHCCCCCCCEEECCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCHHH WIDDWEMTSPDASLEKLTLTARGQDFSYDLDLAADAPLILHGDAGYSVKSADGQASYYYA HCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEECCCCCEEEEEE QPAYEVQGTVTLPEGPVNVTGSAWLDREWSSQPLAEDQTGWDWFSLRLDDGAKLMGFVLR CCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE GDRGDFTSGTWISPDGTAHPLSPGAFQATPQDWSEVAGRSLPTTWQVSLPERDIDIRVRA CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCEEEEEE LNPKAWMGTRFSYWEGPILISGSHGGSGYLEMTGY ECCCHHCCCCEEECCCCEEEECCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA