Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081008

Identifier: 99081008

GI number: 99081008

Start: 1255924

End: 1256397

Strand: Reverse

Name: 99081008

Synonym: TM1040_1167

Alternate gene names: NA

Gene position: 1256397-1255924 (Counterclockwise)

Preceding gene: 99081009

Following gene: 99081006

Centisome position: 39.25

GC content: 64.35

Gene sequence:

>474_bases
ATGACATTCAGCCGATTTCTCGTCCTGCTCGCGGCCGGTGGCTCTGCCGCCTTGCTGCTGGGCGCCTTTGCGTTTCAATA
CATTGGCGAGCTTGCGCCCTGCAAACTCTGCATCTGGCAGCGCTACCCTCACGGCGCAGCAGTTGGCGTCGGCGCGCTGG
CGTTGCTCATTCCCGGCGCGGTGCTGCCCTATCTCGGCGCGGTGGCCGCACTCGCCACCTCGGCGATTGGGGCCTTTCAC
GCGGGTGTCGAACAAGGTTGGTGGGAAGGCCCCTCCACCTGCACCTCTGGCGCGATCGAAAGCCTCAGCGCAGATGAGCT
GATGTCGCAGATCATGTCGGCACCGCTTGTCCGCTGTGACGACATCCCCTGGGAGATGCTCGGCCTCTCCATGGCAGGCT
GGAACGCGGTGATCTCGCTCGGATTGGCTGCGCTTTGGTTTGCAGCTGCGCGTCACGCGCGCAAAAACGCCTGA

Upstream 100 bases:

>100_bases
TTGGCGCGCCAGTGCGGGAGTTTATTGAAAAACGCCTGGGGCTGGTGTTCACCGTCTTTTGTGTGCTGCTGTTTGGTGGC
TTTCTTGCACTGAGGTATCT

Downstream 100 bases:

>100_bases
CCCCAGGCGCTTAGACGCGACTATCTTTCTTGGTGGCCAGAAGAAGGTTTGTCTCGCTGGTCACCACCCCATCAAACATG
CGGATCTTTGCCAGCGCCTC

Product: disulphide bond formation protein DsbB

Products: NA

Alternate protein names: Disulfide Bond Formation Protein DsbB; Disulfide Bond Formation Protein DsbB Family; Disulfide Bond Formation Protein; Disulfide Bond Formation Protein B; Disulphide Bond Formation Protein; Disulfide Bond Formation Protein DsbB-Like Protein; DsbB Family Disulfide Bond Formation Protein

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTFSRFLVLLAAGGSAALLLGAFAFQYIGELAPCKLCIWQRYPHGAAVGVGALALLIPGAVLPYLGAVAALATSAIGAFH
AGVEQGWWEGPSTCTSGAIESLSADELMSQIMSAPLVRCDDIPWEMLGLSMAGWNAVISLGLAALWFAAARHARKNA

Sequences:

>Translated_157_residues
MTFSRFLVLLAAGGSAALLLGAFAFQYIGELAPCKLCIWQRYPHGAAVGVGALALLIPGAVLPYLGAVAALATSAIGAFH
AGVEQGWWEGPSTCTSGAIESLSADELMSQIMSAPLVRCDDIPWEMLGLSMAGWNAVISLGLAALWFAAARHARKNA
>Mature_156_residues
TFSRFLVLLAAGGSAALLLGAFAFQYIGELAPCKLCIWQRYPHGAAVGVGALALLIPGAVLPYLGAVAALATSAIGAFHA
GVEQGWWEGPSTCTSGAIESLSADELMSQIMSAPLVRCDDIPWEMLGLSMAGWNAVISLGLAALWFAAARHARKNA

Specific function: Unknown

COG id: COG1495

COG function: function code O; Disulfide bond formation protein DsbB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16289; Mature: 16158

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFSRFLVLLAAGGSAALLLGAFAFQYIGELAPCKLCIWQRYPHGAAVGVGALALLIPGA
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VLPYLGAVAALATSAIGAFHAGVEQGWWEGPSTCTSGAIESLSADELMSQIMSAPLVRCD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCC
DIPWEMLGLSMAGWNAVISLGLAALWFAAARHARKNA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TFSRFLVLLAAGGSAALLLGAFAFQYIGELAPCKLCIWQRYPHGAAVGVGALALLIPGA
CHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VLPYLGAVAALATSAIGAFHAGVEQGWWEGPSTCTSGAIESLSADELMSQIMSAPLVRCD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCC
DIPWEMLGLSMAGWNAVISLGLAALWFAAARHARKNA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA