| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081008
Identifier: 99081008
GI number: 99081008
Start: 1255924
End: 1256397
Strand: Reverse
Name: 99081008
Synonym: TM1040_1167
Alternate gene names: NA
Gene position: 1256397-1255924 (Counterclockwise)
Preceding gene: 99081009
Following gene: 99081006
Centisome position: 39.25
GC content: 64.35
Gene sequence:
>474_bases ATGACATTCAGCCGATTTCTCGTCCTGCTCGCGGCCGGTGGCTCTGCCGCCTTGCTGCTGGGCGCCTTTGCGTTTCAATA CATTGGCGAGCTTGCGCCCTGCAAACTCTGCATCTGGCAGCGCTACCCTCACGGCGCAGCAGTTGGCGTCGGCGCGCTGG CGTTGCTCATTCCCGGCGCGGTGCTGCCCTATCTCGGCGCGGTGGCCGCACTCGCCACCTCGGCGATTGGGGCCTTTCAC GCGGGTGTCGAACAAGGTTGGTGGGAAGGCCCCTCCACCTGCACCTCTGGCGCGATCGAAAGCCTCAGCGCAGATGAGCT GATGTCGCAGATCATGTCGGCACCGCTTGTCCGCTGTGACGACATCCCCTGGGAGATGCTCGGCCTCTCCATGGCAGGCT GGAACGCGGTGATCTCGCTCGGATTGGCTGCGCTTTGGTTTGCAGCTGCGCGTCACGCGCGCAAAAACGCCTGA
Upstream 100 bases:
>100_bases TTGGCGCGCCAGTGCGGGAGTTTATTGAAAAACGCCTGGGGCTGGTGTTCACCGTCTTTTGTGTGCTGCTGTTTGGTGGC TTTCTTGCACTGAGGTATCT
Downstream 100 bases:
>100_bases CCCCAGGCGCTTAGACGCGACTATCTTTCTTGGTGGCCAGAAGAAGGTTTGTCTCGCTGGTCACCACCCCATCAAACATG CGGATCTTTGCCAGCGCCTC
Product: disulphide bond formation protein DsbB
Products: NA
Alternate protein names: Disulfide Bond Formation Protein DsbB; Disulfide Bond Formation Protein DsbB Family; Disulfide Bond Formation Protein; Disulfide Bond Formation Protein B; Disulphide Bond Formation Protein; Disulfide Bond Formation Protein DsbB-Like Protein; DsbB Family Disulfide Bond Formation Protein
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MTFSRFLVLLAAGGSAALLLGAFAFQYIGELAPCKLCIWQRYPHGAAVGVGALALLIPGAVLPYLGAVAALATSAIGAFH AGVEQGWWEGPSTCTSGAIESLSADELMSQIMSAPLVRCDDIPWEMLGLSMAGWNAVISLGLAALWFAAARHARKNA
Sequences:
>Translated_157_residues MTFSRFLVLLAAGGSAALLLGAFAFQYIGELAPCKLCIWQRYPHGAAVGVGALALLIPGAVLPYLGAVAALATSAIGAFH AGVEQGWWEGPSTCTSGAIESLSADELMSQIMSAPLVRCDDIPWEMLGLSMAGWNAVISLGLAALWFAAARHARKNA >Mature_156_residues TFSRFLVLLAAGGSAALLLGAFAFQYIGELAPCKLCIWQRYPHGAAVGVGALALLIPGAVLPYLGAVAALATSAIGAFHA GVEQGWWEGPSTCTSGAIESLSADELMSQIMSAPLVRCDDIPWEMLGLSMAGWNAVISLGLAALWFAAARHARKNA
Specific function: Unknown
COG id: COG1495
COG function: function code O; Disulfide bond formation protein DsbB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16289; Mature: 16158
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFSRFLVLLAAGGSAALLLGAFAFQYIGELAPCKLCIWQRYPHGAAVGVGALALLIPGA CCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH VLPYLGAVAALATSAIGAFHAGVEQGWWEGPSTCTSGAIESLSADELMSQIMSAPLVRCD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCC DIPWEMLGLSMAGWNAVISLGLAALWFAAARHARKNA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TFSRFLVLLAAGGSAALLLGAFAFQYIGELAPCKLCIWQRYPHGAAVGVGALALLIPGA CHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH VLPYLGAVAALATSAIGAFHAGVEQGWWEGPSTCTSGAIESLSADELMSQIMSAPLVRCD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCC DIPWEMLGLSMAGWNAVISLGLAALWFAAARHARKNA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA