Click here to switch to the map view.

The map label for this gene is arcB [H]

Identifier: 99081004

GI number: 99081004

Start: 1252474

End: 1253520

Strand: Reverse

Name: arcB [H]

Synonym: TM1040_1163

Alternate gene names: 99081004

Gene position: 1253520-1252474 (Counterclockwise)

Preceding gene: 99081005

Following gene: 99081002

Centisome position: 39.16

GC content: 59.5

Gene sequence:

>1047_bases
ATGACCCAACCTTCCGATAAGGCCCTTGTTCCTTTTGTCAGCGTAGACAACATGATGCGCCTCATTCATCATGTTGGCAT
CGAGGATATGATGCGTGATCTGGCCGACTATATCGAGGCCGATTTCAAGCGCTGGGAACTCTTTGACAAGACCCCCCGCG
TCGCCAGCCATTCCGATGTCGGCGTGATCGAACTGATGCCGACCTCAGACGGTGAGGCTTATGGGTTCAAATACGTCAAC
GGCCACCCCAAGAACACCTCTGAGGGGCTGCAGACCGTGACCGCCTTCGGCCTGCTGGCGGATGTCTATACCGGCTATCC
GGTGCTGTTGACCGAGATGACCATTCTGACCGCGCTGCGCACCGCTGCGACCTCGGCCATGGTGGCCAAGCACCTCGCTC
CCAAAGGTGCCGACACGATGGCGATGATCGGAAATGGCGCACAGTCGGAATTCCAGACGCTGGCGATGAAGGCCATCATC
GGCCTCAAGGCCGTGCGCCTTTATGACAAAGACCCGGCGGCGACCGAGAAATGTGCACAGAACCTCGCGGGGCTTGGGGT
GGATGTCACCATCTGCAAAACCCCCGAAGAGGCGATCGAGGGCGCCCAGATCCTCACCACCTGCACCGCCGACAAGCAAT
ATGCCACGATCCTCACCGACAACATGGTCGGCAGCGGTGTGCATATCAACGCGATTGGCGGCGACTGCCCCGGCAAAACC
GAGCTTGCGCCCGGGATCCTCAACCGGTCGGACGTGTTTGTGGAATACCCGCCGCAAACCCGCGTCGAGGGTGAGATCCA
GCAGATGCCCGAGGATTTTGCCGTGACCGAACTGTGGGAAGTGATCTCAGGCCAGAAACCGGGGCGCACCGGTGATCGTC
AAATCACGCTCTTTGATAGCGTCGGCTTTGCCATCGAGGATTTCTCCGCCCTGCGCTACATTCGCGACCGGATCAAAGGG
ACGGACTACTTCATCGATCTCGATATGCTGGCGGACCCGGATGATCCGCGCGATCTCTTTGGCATGGTGCAGCGCGCCAA
GGCCTGA

Upstream 100 bases:

>100_bases
AATTGCTGCCGCTCTCCATTCCCACACTTGAAACGGCCGGTGGGTCGGTGCGTTGCATGCTCGCCGGCATTCACCTCAGC
CCCCGTCAAAGGACCATGCA

Downstream 100 bases:

>100_bases
CGACAAAAGCGCGCCCCTCGATGGCGCGCTTTTCTTTTTAAATCAAGGGCTTCAAGCCTCAAGCTCACTATCCCAATAGA
GGTAGTCCATCCAGCTTTCA

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MTQPSDKALVPFVSVDNMMRLIHHVGIEDMMRDLADYIEADFKRWELFDKTPRVASHSDVGVIELMPTSDGEAYGFKYVN
GHPKNTSEGLQTVTAFGLLADVYTGYPVLLTEMTILTALRTAATSAMVAKHLAPKGADTMAMIGNGAQSEFQTLAMKAII
GLKAVRLYDKDPAATEKCAQNLAGLGVDVTICKTPEEAIEGAQILTTCTADKQYATILTDNMVGSGVHINAIGGDCPGKT
ELAPGILNRSDVFVEYPPQTRVEGEIQQMPEDFAVTELWEVISGQKPGRTGDRQITLFDSVGFAIEDFSALRYIRDRIKG
TDYFIDLDMLADPDDPRDLFGMVQRAKA

Sequences:

>Translated_348_residues
MTQPSDKALVPFVSVDNMMRLIHHVGIEDMMRDLADYIEADFKRWELFDKTPRVASHSDVGVIELMPTSDGEAYGFKYVN
GHPKNTSEGLQTVTAFGLLADVYTGYPVLLTEMTILTALRTAATSAMVAKHLAPKGADTMAMIGNGAQSEFQTLAMKAII
GLKAVRLYDKDPAATEKCAQNLAGLGVDVTICKTPEEAIEGAQILTTCTADKQYATILTDNMVGSGVHINAIGGDCPGKT
ELAPGILNRSDVFVEYPPQTRVEGEIQQMPEDFAVTELWEVISGQKPGRTGDRQITLFDSVGFAIEDFSALRYIRDRIKG
TDYFIDLDMLADPDDPRDLFGMVQRAKA
>Mature_347_residues
TQPSDKALVPFVSVDNMMRLIHHVGIEDMMRDLADYIEADFKRWELFDKTPRVASHSDVGVIELMPTSDGEAYGFKYVNG
HPKNTSEGLQTVTAFGLLADVYTGYPVLLTEMTILTALRTAATSAMVAKHLAPKGADTMAMIGNGAQSEFQTLAMKAIIG
LKAVRLYDKDPAATEKCAQNLAGLGVDVTICKTPEEAIEGAQILTTCTADKQYATILTDNMVGSGVHINAIGGDCPGKTE
LAPGILNRSDVFVEYPPQTRVEGEIQQMPEDFAVTELWEVISGQKPGRTGDRQITLFDSVGFAIEDFSALRYIRDRIKGT
DYFIDLDMLADPDDPRDLFGMVQRAKA

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=221, Percent_Identity=30.316742081448, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI4503065, Length=221, Percent_Identity=30.316742081448, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24642678, Length=253, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 38011; Mature: 37880

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPSDKALVPFVSVDNMMRLIHHVGIEDMMRDLADYIEADFKRWELFDKTPRVASHSDV
CCCCCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GVIELMPTSDGEAYGFKYVNGHPKNTSEGLQTVTAFGLLADVYTGYPVLLTEMTILTALR
CEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TAATSAMVAKHLAPKGADTMAMIGNGAQSEFQTLAMKAIIGLKAVRLYDKDPAATEKCAQ
HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHH
NLAGLGVDVTICKTPEEAIEGAQILTTCTADKQYATILTDNMVGSGVHINAIGGDCPGKT
HHHCCCCEEEEECCCHHHHCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCC
ELAPGILNRSDVFVEYPPQTRVEGEIQQMPEDFAVTELWEVISGQKPGRTGDRQITLFDS
CCCCCCCCCCCEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
VGFAIEDFSALRYIRDRIKGTDYFIDLDMLADPDDPRDLFGMVQRAKA
CCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TQPSDKALVPFVSVDNMMRLIHHVGIEDMMRDLADYIEADFKRWELFDKTPRVASHSDV
CCCCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GVIELMPTSDGEAYGFKYVNGHPKNTSEGLQTVTAFGLLADVYTGYPVLLTEMTILTALR
CEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TAATSAMVAKHLAPKGADTMAMIGNGAQSEFQTLAMKAIIGLKAVRLYDKDPAATEKCAQ
HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHH
NLAGLGVDVTICKTPEEAIEGAQILTTCTADKQYATILTDNMVGSGVHINAIGGDCPGKT
HHHCCCCEEEEECCCHHHHCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCC
ELAPGILNRSDVFVEYPPQTRVEGEIQQMPEDFAVTELWEVISGQKPGRTGDRQITLFDS
CCCCCCCCCCCEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
VGFAIEDFSALRYIRDRIKGTDYFIDLDMLADPDDPRDLFGMVQRAKA
CCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9375792 [H]