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The map label for this gene is cspE [C]

Identifier: 99080915

GI number: 99080915

Start: 1150412

End: 1150618

Strand: Reverse

Name: cspE [C]

Synonym: TM1040_1074

Alternate gene names: 99080915

Gene position: 1150618-1150412 (Counterclockwise)

Preceding gene: 99080918

Following gene: 99080890

Centisome position: 35.95

GC content: 59.9

Gene sequence:

>207_bases
ATGGCTAATGGTACCGTGAAGTGGTTTAACTCCACCAAAGGTTACGGCTTCATCGCGGTTGAAGGCCGCTCCAACGACGT
GTTCGTGCACATCTCCGCAGTGGAACGCTCCGGTCTGACCGGTCTGGCCGACGGCCAGGCAGTGACCTTCGAGATCCAGT
CCGGTCGTGACGGCCGCGAATCCGCAACCGATCTGGCTCTGGCCTAA

Upstream 100 bases:

>100_bases
ACCTTATACTTTCGAAGTTCTGTCTACCCGACCGCTTTCGACGTTAAGCTGCCGGGTCGCCGCACGTTGCGGGCGACAAA
GACCAAAAGGAACTTTGAAA

Downstream 100 bases:

>100_bases
GCATCGGACAAAGGGGGCGCTGCCCGCCTCTTTTGACGGATCGAGATTTGAAACGCCCCGGTCGCATCGCGCCGGGGCGT
TTTTTGTGGTCCGATCGTTT

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MANGTVKWFNSTKGYGFIAVEGRSNDVFVHISAVERSGLTGLADGQAVTFEIQSGRDGRESATDLALA

Sequences:

>Translated_68_residues
MANGTVKWFNSTKGYGFIAVEGRSNDVFVHISAVERSGLTGLADGQAVTFEIQSGRDGRESATDLALA
>Mature_67_residues
ANGTVKWFNSTKGYGFIAVEGRSNDVFVHISAVERSGLTGLADGQAVTFEIQSGRDGRESATDLALA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=53.125, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=50, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=40.2985074626866, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1789979, Length=55, Percent_Identity=52.7272727272727, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1787839, Length=59, Percent_Identity=50.8474576271186, Blast_Score=62, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7178; Mature: 7047

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANGTVKWFNSTKGYGFIAVEGRSNDVFVHISAVERSGLTGLADGQAVTFEIQSGRDGRE
CCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
SATDLALA
CCCEEECC
>Mature Secondary Structure 
ANGTVKWFNSTKGYGFIAVEGRSNDVFVHISAVERSGLTGLADGQAVTFEIQSGRDGRE
CCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
SATDLALA
CCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]