Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is yjbB [H]

Identifier: 99080696

GI number: 99080696

Start: 907552

End: 909198

Strand: Direct

Name: yjbB [H]

Synonym: TM1040_0855

Alternate gene names: 99080696

Gene position: 907552-909198 (Clockwise)

Preceding gene: 99080695

Following gene: 99080697

Centisome position: 28.35

GC content: 61.99

Gene sequence:

>1647_bases
TTGACGGCATTTTTGATTCAGATCGCGGGCGCTGCGGCGCTATTGTTGTGGGCGGTGCGTCTGGTGCGCACCGGCGTGGA
GCGAGCTTTTGCCACACAGCTGAGACAGGGGCTAAGGCGCGCCTCTGACAATCGCCTGCTGGCCGCTTTTTCGGGGCTGG
TGTCGGCGATGATGCTGCAGAGCTCCACCGCCGTGGCCATGCTGGTATCGAACTTTGCCAGCAAGGGCGCGCTCAGTATC
GCGGTTGGGATTGCCATGTTGCTCGGGGCGGATCTTGGCTCTGCCCTTGTGGCGCAGATCCTTCTGGCCCGTCCGGGCAT
TCTGGTGCCTGCGCTCCTTCTGGTGGGGGTGGCGCTGTTCCTGCGCAGCGAACAGCGTAAACTGCGCCAGACCGGGCGTA
TCCTGATCGGGCTTGCGCTGATTTTTGTCTCGCTCGACATGCTGCGCACCGCCACAGCACCAATCATCGAGAGCAAGGGC
GCTGTCGCGGTACTGGGGTATCTCGATTCCGACCTTTTCACGGCCTTTATTCTCGGGGCGATCTTTGCCTGGGTGGTGCA
CTCCAGCGTTGCGGCGATCTTGTTGTTTGTCACCATGGTCGCCCAGGGCGCGCTGCCGCCGATGGCGGCGATGGCGATGG
TGCTTGGCGCCAACCTTGGCGGCGCCATGATCGCCTTTGTGCTGACGCTTGCTGCCGATGTGCGCGCGCGGCGTATCGTG
AGCGCCAATCTCGTCTTGCGAGGCGGCGGAGCGCTTGCGGTGCTCTTGGCGCTGAACCTGAACCTTCTGGACCCCACGTG
GCTCGGGCAGGCGGCTGCCGCTCAAGTGATGGGGCTGCATCTGGTCTTCAATCTTGTGCTCTGTCTGCTGGCGCTGCCCT
TTGTGGGGCTCATCGCCCGCATGAGCGAGCGGGTGATGCGCGACCCCAATGTGCAATCTCTGGGGCGCGGGATGACGGCC
TTGGACCCCGCCGCGCTCGAGGACCCGCCGCGTGCGCTGAACTGTGCCGCGCGCGAGCTGTTGCGCATGGGTGAAGTCAT
CGAGAAAATGCTGGTTGCGGCCATGGGGCTCTATGAAGTCTGGGATGACCGCGTCGCCGAGGCGATCCGTGACGAGGATA
AGGCACTGCGGCAGATGCATCTCGACCTCAAGCTCTATCTGGCGGGGATGAACCGTCACAAGCTGGATGACAGCGCCGTC
AATGGCGCGATCGAGGCATCGCTCATGGCCGCCAACCTGGAGGCGGCCGCCGATCAGGTGGCCCGCAAAATGACCGATCT
GGCGCGCAAGCTCTCGCTTGAAGGGATCAGCTTTTCCAAGAGTGGCCAGCAGGAAATCAACGATTTCATGGACCGCATTC
AAGCCAATGTTCAACTCGCGCTAACGGTCATGATGACCCGCAACCCCGATGATGCGCGCGAGCTGGTGGCCGAAAAGGAA
AGCATCCGAACCGCCGAACAAAAACTGCAGAGCAAACACCTGTCGCGCCTTCGCGAAGGCGTCAGCGAAAGCATCGAGAC
CAGCGCAATCCATCAGGAAACCTTGCGCATTCTCAAACAGGTCAATACCTCTTTTGCGATGGCAGGGTATCCGATCCTCG
ACGAATCCGGTGATCTGCTGTCCAGTCGCCTGTCCTCGCAGGGCTGA

Upstream 100 bases:

>100_bases
AAGAGCGCAATTCGACCGAGTTGGATCGTCTCGACAACATAAACTCGTCGAAAAATACGTTGGGCTGTGACCCAACCCAG
AACGAGGACGGAAGACAGGA

Downstream 100 bases:

>100_bases
CCTGTCTGCAGCCGCCTGCCTCCTGTTCCCTCTGATGCGGGAGCGGGCGAATTTCTATAGCAAGGTATTGAAATGAAAGA
CTTCCCAAAGATCTGGTTCC

Product: Na+/Pi-cotransporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 547

Protein sequence:

>548_residues
MTAFLIQIAGAAALLLWAVRLVRTGVERAFATQLRQGLRRASDNRLLAAFSGLVSAMMLQSSTAVAMLVSNFASKGALSI
AVGIAMLLGADLGSALVAQILLARPGILVPALLLVGVALFLRSEQRKLRQTGRILIGLALIFVSLDMLRTATAPIIESKG
AVAVLGYLDSDLFTAFILGAIFAWVVHSSVAAILLFVTMVAQGALPPMAAMAMVLGANLGGAMIAFVLTLAADVRARRIV
SANLVLRGGGALAVLLALNLNLLDPTWLGQAAAAQVMGLHLVFNLVLCLLALPFVGLIARMSERVMRDPNVQSLGRGMTA
LDPAALEDPPRALNCAARELLRMGEVIEKMLVAAMGLYEVWDDRVAEAIRDEDKALRQMHLDLKLYLAGMNRHKLDDSAV
NGAIEASLMAANLEAAADQVARKMTDLARKLSLEGISFSKSGQQEINDFMDRIQANVQLALTVMMTRNPDDARELVAEKE
SIRTAEQKLQSKHLSRLREGVSESIETSAIHQETLRILKQVNTSFAMAGYPILDESGDLLSSRLSSQG

Sequences:

>Translated_548_residues
MTAFLIQIAGAAALLLWAVRLVRTGVERAFATQLRQGLRRASDNRLLAAFSGLVSAMMLQSSTAVAMLVSNFASKGALSI
AVGIAMLLGADLGSALVAQILLARPGILVPALLLVGVALFLRSEQRKLRQTGRILIGLALIFVSLDMLRTATAPIIESKG
AVAVLGYLDSDLFTAFILGAIFAWVVHSSVAAILLFVTMVAQGALPPMAAMAMVLGANLGGAMIAFVLTLAADVRARRIV
SANLVLRGGGALAVLLALNLNLLDPTWLGQAAAAQVMGLHLVFNLVLCLLALPFVGLIARMSERVMRDPNVQSLGRGMTA
LDPAALEDPPRALNCAARELLRMGEVIEKMLVAAMGLYEVWDDRVAEAIRDEDKALRQMHLDLKLYLAGMNRHKLDDSAV
NGAIEASLMAANLEAAADQVARKMTDLARKLSLEGISFSKSGQQEINDFMDRIQANVQLALTVMMTRNPDDARELVAEKE
SIRTAEQKLQSKHLSRLREGVSESIETSAIHQETLRILKQVNTSFAMAGYPILDESGDLLSSRLSSQG
>Mature_547_residues
TAFLIQIAGAAALLLWAVRLVRTGVERAFATQLRQGLRRASDNRLLAAFSGLVSAMMLQSSTAVAMLVSNFASKGALSIA
VGIAMLLGADLGSALVAQILLARPGILVPALLLVGVALFLRSEQRKLRQTGRILIGLALIFVSLDMLRTATAPIIESKGA
VAVLGYLDSDLFTAFILGAIFAWVVHSSVAAILLFVTMVAQGALPPMAAMAMVLGANLGGAMIAFVLTLAADVRARRIVS
ANLVLRGGGALAVLLALNLNLLDPTWLGQAAAAQVMGLHLVFNLVLCLLALPFVGLIARMSERVMRDPNVQSLGRGMTAL
DPAALEDPPRALNCAARELLRMGEVIEKMLVAAMGLYEVWDDRVAEAIRDEDKALRQMHLDLKLYLAGMNRHKLDDSAVN
GAIEASLMAANLEAAADQVARKMTDLARKLSLEGISFSKSGQQEINDFMDRIQANVQLALTVMMTRNPDDARELVAEKES
IRTAEQKLQSKHLSRLREGVSESIETSAIHQETLRILKQVNTSFAMAGYPILDESGDLLSSRLSSQG

Specific function: Unknown

COG id: COG1283

COG function: function code P; Na+/phosphate symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqeW [H]

Homologues:

Organism=Escherichia coli, GI1790451, Length=537, Percent_Identity=33.147113594041, Blast_Score=251, Evalue=1e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003841
- InterPro:   IPR004633 [H]

Pfam domain/function: PF02690 Na_Pi_cotrans [H]

EC number: NA

Molecular weight: Translated: 58662; Mature: 58531

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFLIQIAGAAALLLWAVRLVRTGVERAFATQLRQGLRRASDNRLLAAFSGLVSAMMLQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SSTAVAMLVSNFASKGALSIAVGIAMLLGADLGSALVAQILLARPGILVPALLLVGVALF
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LRSEQRKLRQTGRILIGLALIFVSLDMLRTATAPIIESKGAVAVLGYLDSDLFTAFILGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHHHHHHHHHHHHH
IFAWVVHSSVAAILLFVTMVAQGALPPMAAMAMVLGANLGGAMIAFVLTLAADVRARRIV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
SANLVLRGGGALAVLLALNLNLLDPTWLGQAAAAQVMGLHLVFNLVLCLLALPFVGLIAR
HHCEEEECCCHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSERVMRDPNVQSLGRGMTALDPAALEDPPRALNCAARELLRMGEVIEKMLVAAMGLYEV
HHHHHHCCCCHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WDDRVAEAIRDEDKALRQMHLDLKLYLAGMNRHKLDDSAVNGAIEASLMAANLEAAADQV
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARKMTDLARKLSLEGISFSKSGQQEINDFMDRIQANVQLALTVMMTRNPDDARELVAEKE
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHHEEEEEEEECCCHHHHHHHHHHH
SIRTAEQKLQSKHLSRLREGVSESIETSAIHQETLRILKQVNTSFAMAGYPILDESGDLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHH
SSRLSSQG
HHHHCCCC
>Mature Secondary Structure 
TAFLIQIAGAAALLLWAVRLVRTGVERAFATQLRQGLRRASDNRLLAAFSGLVSAMMLQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SSTAVAMLVSNFASKGALSIAVGIAMLLGADLGSALVAQILLARPGILVPALLLVGVALF
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LRSEQRKLRQTGRILIGLALIFVSLDMLRTATAPIIESKGAVAVLGYLDSDLFTAFILGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHHHHHHHHHHHHH
IFAWVVHSSVAAILLFVTMVAQGALPPMAAMAMVLGANLGGAMIAFVLTLAADVRARRIV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
SANLVLRGGGALAVLLALNLNLLDPTWLGQAAAAQVMGLHLVFNLVLCLLALPFVGLIAR
HHCEEEECCCHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSERVMRDPNVQSLGRGMTALDPAALEDPPRALNCAARELLRMGEVIEKMLVAAMGLYEV
HHHHHHCCCCHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WDDRVAEAIRDEDKALRQMHLDLKLYLAGMNRHKLDDSAVNGAIEASLMAANLEAAADQV
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARKMTDLARKLSLEGISFSKSGQQEINDFMDRIQANVQLALTVMMTRNPDDARELVAEKE
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHHEEEEEEEECCCHHHHHHHHHHH
SIRTAEQKLQSKHLSRLREGVSESIETSAIHQETLRILKQVNTSFAMAGYPILDESGDLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHH
SSRLSSQG
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]