| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080644
Identifier: 99080644
GI number: 99080644
Start: 850956
End: 852005
Strand: Direct
Name: 99080644
Synonym: TM1040_0803
Alternate gene names: NA
Gene position: 850956-852005 (Clockwise)
Preceding gene: 99080643
Following gene: 99080645
Centisome position: 26.58
GC content: 58.95
Gene sequence:
>1050_bases ATGGCGGTGAATGACGACCTCGCGGACGAACTGATCCGTCATCAGGTCTATCTACAGCGCTTCGGAAACGCTACGGCCCG CAAGGTTCTGGCGCTGCTCAAGCGGTCTGACTCGCGGCTAATTGAGCGTCTACTGCGCGACGACCTGTCTGGGCTTTCAC GGACCCGGCAAGAAGCGCTCCTGCGGGAGCTGCGCAGGATAATCGATAGCGCGTTTGAGGATGCCACAGGGGCGCTACAA ATCGACCTCAACGGCCTCGCGGTCTACGAAGGGGAATATCAGCTCGAAATGTTCCGACGGGTGCTGCCGGTAAAGTTCGA GATGGTCGGGCCTGCTGCTGATCAGATCTTGGCTGCTGTGAACAGCCGGCCATTTCAAGGTAAGTTGCTGAAAGAGGTCT ATTCGGAGCTAAGCGCTAGTTCGTTCCGCAAGGTCCGTGACACCATCCGGGCCGGGTTCGTTGAGGGGCGCACCACAGAT GAGATCGTGCGCGATCTGCGCGGCACCAAGGCGCAGGGTTTCAAGGACGGCGTGCTGGACACCAACCGCCGGGCGACGGA AACGGTAGTAAGGACAGCGGTTAACCATACCGCCAACACGGCGCGTGAATACACATATGAGCGCAACGCCGACCTCGTGA AGGGGGTGCGCTGGAACAGCACGCTCGACGGCCGCACTTCGGCGGTCTGCAGGGCGCGGGATGGCAAGGTTTACGATCCG GGCAATGGGCCAAGACCGCCGGCACATTTCAATTGTCGCTCCAGCACATCGCCGGTTCTCGCGTCTTGGCGCGATCTGGG CTTTGACATTGACGAACTACCGCCATCCACCCGCGCGAGCATGAACGGGCAGGTTCCGGCGGATCAGGACTATGATACAT GGCTGAGAAAACAGCCTCGGGCTTTTCAGGTCGAGGTTCTCGGTGAAACTAAAGCAAAACTGTTCCGGGCTGGTCTTAAG ATGGATCGCTTCATTGACAGGAAAGGCCAAGAGCTTACCCTGACAGAACTGAAACGCCGGGAGCGCGACCTTTGGGAAAA AGCCACCTAA
Upstream 100 bases:
>100_bases TTCGTTGAGGAAATGAAGCGCCGCGGCTTCATCGCCGAGGACACCGATACGGACGCATATCTGGGCGATCTGGACGACGA AACGCCGCCGGGGCTCACCG
Downstream 100 bases:
>100_bases GACTGGTGACAGACAAGCCGCAGAAGCCCAAACGGGCCTATGCGGGCGAGCCCATTGAGTGCCCTACATGCCAAAGCCGG GATCTGATTGAGACATTTTC
Product: phage putative head morphogenesis protein, SPP1 gp7
Products: NA
Alternate protein names: Phage Head Morphogenesis Protein; Phage Head Morphogenesis Protein SPP1 Gp7 Family; Bacteriophage Protein; Phage Protein; SPP1 Family Phage Head Morphogenesis Protein
Number of amino acids: Translated: 349; Mature: 348
Protein sequence:
>349_residues MAVNDDLADELIRHQVYLQRFGNATARKVLALLKRSDSRLIERLLRDDLSGLSRTRQEALLRELRRIIDSAFEDATGALQ IDLNGLAVYEGEYQLEMFRRVLPVKFEMVGPAADQILAAVNSRPFQGKLLKEVYSELSASSFRKVRDTIRAGFVEGRTTD EIVRDLRGTKAQGFKDGVLDTNRRATETVVRTAVNHTANTAREYTYERNADLVKGVRWNSTLDGRTSAVCRARDGKVYDP GNGPRPPAHFNCRSSTSPVLASWRDLGFDIDELPPSTRASMNGQVPADQDYDTWLRKQPRAFQVEVLGETKAKLFRAGLK MDRFIDRKGQELTLTELKRRERDLWEKAT
Sequences:
>Translated_349_residues MAVNDDLADELIRHQVYLQRFGNATARKVLALLKRSDSRLIERLLRDDLSGLSRTRQEALLRELRRIIDSAFEDATGALQ IDLNGLAVYEGEYQLEMFRRVLPVKFEMVGPAADQILAAVNSRPFQGKLLKEVYSELSASSFRKVRDTIRAGFVEGRTTD EIVRDLRGTKAQGFKDGVLDTNRRATETVVRTAVNHTANTAREYTYERNADLVKGVRWNSTLDGRTSAVCRARDGKVYDP GNGPRPPAHFNCRSSTSPVLASWRDLGFDIDELPPSTRASMNGQVPADQDYDTWLRKQPRAFQVEVLGETKAKLFRAGLK MDRFIDRKGQELTLTELKRRERDLWEKAT >Mature_348_residues AVNDDLADELIRHQVYLQRFGNATARKVLALLKRSDSRLIERLLRDDLSGLSRTRQEALLRELRRIIDSAFEDATGALQI DLNGLAVYEGEYQLEMFRRVLPVKFEMVGPAADQILAAVNSRPFQGKLLKEVYSELSASSFRKVRDTIRAGFVEGRTTDE IVRDLRGTKAQGFKDGVLDTNRRATETVVRTAVNHTANTAREYTYERNADLVKGVRWNSTLDGRTSAVCRARDGKVYDPG NGPRPPAHFNCRSSTSPVLASWRDLGFDIDELPPSTRASMNGQVPADQDYDTWLRKQPRAFQVEVLGETKAKLFRAGLKM DRFIDRKGQELTLTELKRRERDLWEKAT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39620; Mature: 39489
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVNDDLADELIRHQVYLQRFGNATARKVLALLKRSDSRLIERLLRDDLSGLSRTRQEAL CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LRELRRIIDSAFEDATGALQIDLNGLAVYEGEYQLEMFRRVLPVKFEMVGPAADQILAAV HHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHHHHHHCCCCEEECCCHHHHHHHHH NSRPFQGKLLKEVYSELSASSFRKVRDTIRAGFVEGRTTDEIVRDLRGTKAQGFKDGVLD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC TNRRATETVVRTAVNHTANTAREYTYERNADLVKGVRWNSTLDGRTSAVCRARDGKVYDP CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCCCCCEECC GNGPRPPAHFNCRSSTSPVLASWRDLGFDIDELPPSTRASMNGQVPADQDYDTWLRKQPR CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCC AFQVEVLGETKAKLFRAGLKMDRFIDRKGQELTLTELKRRERDLWEKAT EEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCC >Mature Secondary Structure AVNDDLADELIRHQVYLQRFGNATARKVLALLKRSDSRLIERLLRDDLSGLSRTRQEAL CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LRELRRIIDSAFEDATGALQIDLNGLAVYEGEYQLEMFRRVLPVKFEMVGPAADQILAAV HHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHHHHHHCCCCEEECCCHHHHHHHHH NSRPFQGKLLKEVYSELSASSFRKVRDTIRAGFVEGRTTDEIVRDLRGTKAQGFKDGVLD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC TNRRATETVVRTAVNHTANTAREYTYERNADLVKGVRWNSTLDGRTSAVCRARDGKVYDP CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCCCCCEECC GNGPRPPAHFNCRSSTSPVLASWRDLGFDIDELPPSTRASMNGQVPADQDYDTWLRKQPR CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCC AFQVEVLGETKAKLFRAGLKMDRFIDRKGQELTLTELKRRERDLWEKAT EEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA