| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is ymfN [C]
Identifier: 99080635
GI number: 99080635
Start: 844130
End: 844861
Strand: Direct
Name: ymfN [C]
Synonym: TM1040_0794
Alternate gene names: 99080635
Gene position: 844130-844861 (Clockwise)
Preceding gene: 99080634
Following gene: 99080636
Centisome position: 26.37
GC content: 60.38
Gene sequence:
>732_bases ATGTCAGCCGTTTTCGAGAGCGAAACACTGGGAGCCACAGAGCGTCTCATTATGCTCGCACTCGCTGATCATGCTGACGA CGAGGGCCGCTGCTATCCATCAATCACCCGCTTGTGCCAGCGCACAGGGCTCGGGGAGCGAGCGGTGCAGACGAACATCA GGAAACTCCAGGCGCAGGGCTATGTGGAGATCATACCGGGGGCCGGGCGGAATGGGTCCAACCTCTATTTCGTCCGCCCA ACACCTACGCCACCCCCCGCACCAGATGCACCCCCGCACGAAATGCACCCCGCACCAGATGCACCACCCCCCCGCACGAA ATGCACCCCTACCCCCGCACCAGATGCACCCAAACCGTCAGTAACCATCATTGAACCGTCATTACCCCTTGTAGTTCCCC AGCGGGAAAAACCGAAAAAGCCAGACAAGGCACGGCTGCCCGAGGACTGGGCACCCAGTGACGAAGACCGAGCATACGCC CTTTCACTGAACTTGACCGACGCCGAAATTGAGGAGATCGCAGATGACTTTCATGCCTATTGGACAGACCGGACAGACGC TGGCGGAAGAAAGTCTCGACGCGGTTGGCGGCAAACGTGGCGCAACCGCTGTCGCGACGTCGCCCCAAAATTCATCCGAA ATCGCCGGATGGCTGGCCAAGCATACACCGGCGGACATGGACAAGGCGGCGGTATCGCGGGCGCAGTCGCACGGCGTCAA TTTGGAGGTTAG
Upstream 100 bases:
>100_bases ACGTGGGATTTCGCTGCGTGTTCCCGACAGAGTTTGGCCCCGTCGAGAAGGGCGGGGCGGTTTATATCGAGATTGGAGGC CAGCCATGAGCATCCGCATC
Downstream 100 bases:
>100_bases GTACGAGGGACGATACCCGACCGGAGCCAACGGCGAGTATCTCCCCAGCTACGAGGTCGCAGTTGGGTGCCACATCCACG GGACCACGGCTCAGCGCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MSAVFESETLGATERLIMLALADHADDEGRCYPSITRLCQRTGLGERAVQTNIRKLQAQGYVEIIPGAGRNGSNLYFVRP TPTPPPAPDAPPHEMHPAPDAPPPRTKCTPTPAPDAPKPSVTIIEPSLPLVVPQREKPKKPDKARLPEDWAPSDEDRAYA LSLNLTDAEIEEIADDFHAYWTDRTDAGGRKSRRGWRQTWRNRCRDVAPKFIRNRRMAGQAYTGGHGQGGGIAGAVARRQ FGG
Sequences:
>Translated_243_residues MSAVFESETLGATERLIMLALADHADDEGRCYPSITRLCQRTGLGERAVQTNIRKLQAQGYVEIIPGAGRNGSNLYFVRP TPTPPPAPDAPPHEMHPAPDAPPPRTKCTPTPAPDAPKPSVTIIEPSLPLVVPQREKPKKPDKARLPEDWAPSDEDRAYA LSLNLTDAEIEEIADDFHAYWTDRTDAGGRKSRRGWRQTWRNRCRDVAPKFIRNRRMAGQAYTGGHGQGGGIAGAVARRQ FGG >Mature_242_residues SAVFESETLGATERLIMLALADHADDEGRCYPSITRLCQRTGLGERAVQTNIRKLQAQGYVEIIPGAGRNGSNLYFVRPT PTPPPAPDAPPHEMHPAPDAPPPRTKCTPTPAPDAPKPSVTIIEPSLPLVVPQREKPKKPDKARLPEDWAPSDEDRAYAL SLNLTDAEIEEIADDFHAYWTDRTDAGGRKSRRGWRQTWRNRCRDVAPKFIRNRRMAGQAYTGGHGQGGGIAGAVARRQF GG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26676; Mature: 26545
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVFESETLGATERLIMLALADHADDEGRCYPSITRLCQRTGLGERAVQTNIRKLQAQG CCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCC YVEIIPGAGRNGSNLYFVRPTPTPPPAPDAPPHEMHPAPDAPPPRTKCTPTPAPDAPKPS CEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VTIIEPSLPLVVPQREKPKKPDKARLPEDWAPSDEDRAYALSLNLTDAEIEEIADDFHAY EEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH WTDRTDAGGRKSRRGWRQTWRNRCRDVAPKFIRNRRMAGQAYTGGHGQGGGIAGAVARRQ HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH FGG CCC >Mature Secondary Structure SAVFESETLGATERLIMLALADHADDEGRCYPSITRLCQRTGLGERAVQTNIRKLQAQG CCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCC YVEIIPGAGRNGSNLYFVRPTPTPPPAPDAPPHEMHPAPDAPPPRTKCTPTPAPDAPKPS CEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VTIIEPSLPLVVPQREKPKKPDKARLPEDWAPSDEDRAYALSLNLTDAEIEEIADDFHAY EEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH WTDRTDAGGRKSRRGWRQTWRNRCRDVAPKFIRNRRMAGQAYTGGHGQGGGIAGAVARRQ HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH FGG CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA