| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080537
Identifier: 99080537
GI number: 99080537
Start: 747262
End: 747540
Strand: Direct
Name: 99080537
Synonym: TM1040_0696
Alternate gene names: NA
Gene position: 747262-747540 (Clockwise)
Preceding gene: 99080534
Following gene: 99080539
Centisome position: 23.35
GC content: 62.37
Gene sequence:
>279_bases ATGGCAAAACCAAAGGCACGAGATTTGGCGGATCTTCGGGACCTTGCGCAACCCGGGGCGCAGATCGCTGTACGAGTGAC GCCCAAGGCGGCGCAGAACGCGGTGCTGCGCAAGCGGGATGAGATCAAGGTGCTGGTCACAACGGTCCCGGAAGGGGGCA AGGCAAATGCTGATGTGGTCGCACTTCTGTCCCGCGCACTCGGGGTCTCACCGTCGCGGCTGACACTCCTGCGTGGTGCG ACAAGTCGCGACAAGGTCTTTCTTGTCACCGCCCCTTGA
Upstream 100 bases:
>100_bases TTGCACAGAGGATCCCGCGTCAGAGCGCATATGGACGATCGGGTGACGGATCAGGCCGCGCACGCGGCGTTGGCGCCGGG AGATTAGGACGGGTGGAGGC
Downstream 100 bases:
>100_bases GTTGTTCCGGCTAGGCACCGGGATAGGTCCTGTCGCGATCACCGGGAGAGGTGCGGGTTTGCCGCATCATGGCGCTGAGG CGCTCTGCAGCGCGCCTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 92; Mature: 91
Protein sequence:
>92_residues MAKPKARDLADLRDLAQPGAQIAVRVTPKAAQNAVLRKRDEIKVLVTTVPEGGKANADVVALLSRALGVSPSRLTLLRGA TSRDKVFLVTAP
Sequences:
>Translated_92_residues MAKPKARDLADLRDLAQPGAQIAVRVTPKAAQNAVLRKRDEIKVLVTTVPEGGKANADVVALLSRALGVSPSRLTLLRGA TSRDKVFLVTAP >Mature_91_residues AKPKARDLADLRDLAQPGAQIAVRVTPKAAQNAVLRKRDEIKVLVTTVPEGGKANADVVALLSRALGVSPSRLTLLRGAT SRDKVFLVTAP
Specific function: Unknown
COG id: COG1872
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0235 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003746 [H]
Pfam domain/function: PF02594 DUF167 [H]
EC number: NA
Molecular weight: Translated: 9725; Mature: 9593
Theoretical pI: Translated: 11.59; Mature: 11.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKPKARDLADLRDLAQPGAQIAVRVTPKAAQNAVLRKRDEIKVLVTTVPEGGKANADVV CCCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHH ALLSRALGVSPSRLTLLRGATSRDKVFLVTAP HHHHHHHCCCCCCEEEEECCCCCCEEEEEECC >Mature Secondary Structure AKPKARDLADLRDLAQPGAQIAVRVTPKAAQNAVLRKRDEIKVLVTTVPEGGKANADVV CCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHH ALLSRALGVSPSRLTLLRGATSRDKVFLVTAP HHHHHHHCCCCCCEEEEECCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA