Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080514

Identifier: 99080514

GI number: 99080514

Start: 720577

End: 721068

Strand: Direct

Name: 99080514

Synonym: TM1040_0673

Alternate gene names: NA

Gene position: 720577-721068 (Clockwise)

Preceding gene: 99080513

Following gene: 99080516

Centisome position: 22.51

GC content: 57.11

Gene sequence:

>492_bases
ATGTCCTACAAATCCCTCGGCCGGTCTGCGGCCTTTGGTGTGTTCGCAAGCGTTGCATTCGCCACTTCGGCTTCGGCACA
GATGCTTGTGCAGGATGCCTATGCGCGATCCTCCAACAAAATGGCGGGCGCGGCCTTTATGGAAATCACCAACCAAGGCG
CATCAGAGGATCGCCTGATCGACGCACGCTCTGATGTGGCCAAGCGTGTGCAACTGCACACACACCAGGAAGACGCCAAT
GGCGTGATGAAGATGATGCATGTCGAAGAAGGGTTTGCGATTCCCGCCGGAGAGACTCATCTGCTACGGCGTGGTGGCGA
TCACGTCATGTTTATGGGGCTCACACGGGAACTCAAGGACGGCGAGACTGTCGATGTGATCCTTGTGTTTGAAAACGCAG
GAGAAGTGTCGGTGCAGATCCCTGTCGACATGGATCGCGCACCCAAGGGCGGCCACGGAAATCACAGCGGGCACGGTGAT
CACTCGAACTGA

Upstream 100 bases:

>100_bases
GCGCGCGCGCCGCCCTTGGTCTGACGTCTGCTCTGTTTATAGCCAGACCGGTCGCCTGACAGCGCCCGGAACACTCAGAT
CTCATATCAAGGAAAAACTA

Downstream 100 bases:

>100_bases
TCTTGGCAGAGACACCCGAGATGTCAGACAAGGCTCCGGTTATGACCGGAGCCTTTTTTTACGCAGCGTCCCGCAGGAGG
TCCTCTACCCAGATCGGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSYKSLGRSAAFGVFASVAFATSASAQMLVQDAYARSSNKMAGAAFMEITNQGASEDRLIDARSDVAKRVQLHTHQEDAN
GVMKMMHVEEGFAIPAGETHLLRRGGDHVMFMGLTRELKDGETVDVILVFENAGEVSVQIPVDMDRAPKGGHGNHSGHGD
HSN

Sequences:

>Translated_163_residues
MSYKSLGRSAAFGVFASVAFATSASAQMLVQDAYARSSNKMAGAAFMEITNQGASEDRLIDARSDVAKRVQLHTHQEDAN
GVMKMMHVEEGFAIPAGETHLLRRGGDHVMFMGLTRELKDGETVDVILVFENAGEVSVQIPVDMDRAPKGGHGNHSGHGD
HSN
>Mature_162_residues
SYKSLGRSAAFGVFASVAFATSASAQMLVQDAYARSSNKMAGAAFMEITNQGASEDRLIDARSDVAKRVQLHTHQEDANG
VMKMMHVEEGFAIPAGETHLLRRGGDHVMFMGLTRELKDGETVDVILVFENAGEVSVQIPVDMDRAPKGGHGNHSGHGDH
SN

Specific function: Unknown

COG id: COG2847

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007410 [H]

Pfam domain/function: PF04314 DUF461 [H]

EC number: NA

Molecular weight: Translated: 17500; Mature: 17369

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKSLGRSAAFGVFASVAFATSASAQMLVQDAYARSSNKMAGAAFMEITNQGASEDRLI
CCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHEEHHCCCCCCCCEE
DARSDVAKRVQLHTHQEDANGVMKMMHVEEGFAIPAGETHLLRRGGDHVMFMGLTRELKD
CCHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCCCCCCHHHHHCCCCEEEEEEEECCCCC
GETVDVILVFENAGEVSVQIPVDMDRAPKGGHGNHSGHGDHSN
CCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SYKSLGRSAAFGVFASVAFATSASAQMLVQDAYARSSNKMAGAAFMEITNQGASEDRLI
CHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHEEHHCCCCCCCCEE
DARSDVAKRVQLHTHQEDANGVMKMMHVEEGFAIPAGETHLLRRGGDHVMFMGLTRELKD
CCHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCCCCCCHHHHHCCCCEEEEEEEECCCCC
GETVDVILVFENAGEVSVQIPVDMDRAPKGGHGNHSGHGDHSN
CCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA