Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080435

Identifier: 99080435

GI number: 99080435

Start: 635522

End: 636592

Strand: Reverse

Name: 99080435

Synonym: TM1040_0594

Alternate gene names: NA

Gene position: 636592-635522 (Counterclockwise)

Preceding gene: 99080444

Following gene: 99080434

Centisome position: 19.89

GC content: 61.34

Gene sequence:

>1071_bases
TTGCTTTCCCGCGCGCAACGCTCCGGTGACAGACGGCATGCGCTTGGCCACTCTGGTGCTGTCCCTGCCACGCTGCGGCC
GTTTCTCTCGTTGATCTGTTTCTGCTTGGTCGCAGTCTGGATGGCCACGCCTCTTCGGGCCGCCTGCAGCGGCCTAGACC
TGCGGGAGAGCGCCGCGCCAGGTATGTGGGCAGAGATCGAGGCGGAGATTGCCCTCACCCCGTTTGCGCGCGGGCTCAGC
TGGGTCGCAACCCGCGGCGATCGTCGCCTACATATCATTGGCACCATGCATCTGAACGATCCGCGCCACGATGCGCTGGT
TGCGCATATGGCGCCTGCAATTCAGGCGGCCGATGCGGTCTTGCTCGAGGTCAATCGTGCAGACAAGGCCAGACTCGAGC
GCACCCTGGCTGAGACGCCATCGCTCATCTTTATCACCGAGGGGCCGACCTTGATCGACCGCCTGCCCCCAGAGGAGTGG
GACGAGATCGCAGAGCGCGCCGGCGCTGCCGGAATCCCGCCTTTCATGGCGGCCAAGATGCGACCCTGGTTTCTGTCATT
GTCAATGTCTGTGCCACTCTGTGCGCGCGCAATTGAGGATGTCACTGATGGGCTCGACATGAAATTGATGACCCTGGCAG
AGCGCGCCGGCGTCGAAACCCTATCGCTCGAAGATCCTCTGGGCTTGTTCCAGTTGTTTGACGCCACGCCAATCGAAGAG
CAGATCAAGGAACTGCGAAGCTACATCGCCATGGCAGGCGTGGGCGCGGATGATTTCTACACGATGGTGGAAAGCTATTT
TGACGGGGAGGTTCAGGCCTACGTCCTTTTGCAGTTGAAGCAATTTCTCACATCAGAAAGCGACCTCTCGGTAGCAGAGC
GTCAGGCGCAGGTGGATGACCTGCTGGAGGCTCTGCTCTACCAGCGCAACCGTGATTGGATCCCGGTCATAGAAGCCACT
GCGGGCAACCGACTGGTGATCGCGGTGGGCGCGGCGCATCTCCCCGGAGAGGCCGGGGTGCTGGCCCTTCTCGAAGCAGA
GGGTTATCAAATTGAAGAGGCGCTCCGGTGA

Upstream 100 bases:

>100_bases
AGAGATCCTGTTCACGTTCCATCCCGGCCATGCTTGCCCCGGCTCGGTCTCAATGGCAATGTGTCCGAGACTGATTTTTA
TGCGGAATACCATGAACAGA

Downstream 100 bases:

>100_bases
AGTATTTAAGGGGACGCGCCACACTGATCGAACGGTGCGGGAAGGCGCTGCTGGAGTTGCGCGCGCGGGCTTTCACGGTG
CTCATCGCCGCAGTGCTGAT

Product: GumN

Products: NA

Alternate protein names: GumN Protein; SLA2 Protein

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MLSRAQRSGDRRHALGHSGAVPATLRPFLSLICFCLVAVWMATPLRAACSGLDLRESAAPGMWAEIEAEIALTPFARGLS
WVATRGDRRLHIIGTMHLNDPRHDALVAHMAPAIQAADAVLLEVNRADKARLERTLAETPSLIFITEGPTLIDRLPPEEW
DEIAERAGAAGIPPFMAAKMRPWFLSLSMSVPLCARAIEDVTDGLDMKLMTLAERAGVETLSLEDPLGLFQLFDATPIEE
QIKELRSYIAMAGVGADDFYTMVESYFDGEVQAYVLLQLKQFLTSESDLSVAERQAQVDDLLEALLYQRNRDWIPVIEAT
AGNRLVIAVGAAHLPGEAGVLALLEAEGYQIEEALR

Sequences:

>Translated_356_residues
MLSRAQRSGDRRHALGHSGAVPATLRPFLSLICFCLVAVWMATPLRAACSGLDLRESAAPGMWAEIEAEIALTPFARGLS
WVATRGDRRLHIIGTMHLNDPRHDALVAHMAPAIQAADAVLLEVNRADKARLERTLAETPSLIFITEGPTLIDRLPPEEW
DEIAERAGAAGIPPFMAAKMRPWFLSLSMSVPLCARAIEDVTDGLDMKLMTLAERAGVETLSLEDPLGLFQLFDATPIEE
QIKELRSYIAMAGVGADDFYTMVESYFDGEVQAYVLLQLKQFLTSESDLSVAERQAQVDDLLEALLYQRNRDWIPVIEAT
AGNRLVIAVGAAHLPGEAGVLALLEAEGYQIEEALR
>Mature_356_residues
MLSRAQRSGDRRHALGHSGAVPATLRPFLSLICFCLVAVWMATPLRAACSGLDLRESAAPGMWAEIEAEIALTPFARGLS
WVATRGDRRLHIIGTMHLNDPRHDALVAHMAPAIQAADAVLLEVNRADKARLERTLAETPSLIFITEGPTLIDRLPPEEW
DEIAERAGAAGIPPFMAAKMRPWFLSLSMSVPLCARAIEDVTDGLDMKLMTLAERAGVETLSLEDPLGLFQLFDATPIEE
QIKELRSYIAMAGVGADDFYTMVESYFDGEVQAYVLLQLKQFLTSESDLSVAERQAQVDDLLEALLYQRNRDWIPVIEAT
AGNRLVIAVGAAHLPGEAGVLALLEAEGYQIEEALR

Specific function: Unknown

COG id: COG3735

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38997; Mature: 38997

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRAQRSGDRRHALGHSGAVPATLRPFLSLICFCLVAVWMATPLRAACSGLDLRESAAP
CCCCCHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHCCC
GMWAEIEAEIALTPFARGLSWVATRGDRRLHIIGTMHLNDPRHDALVAHMAPAIQAADAV
CCCEEEEEEEEECHHHHCHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
LLEVNRADKARLERTLAETPSLIFITEGPTLIDRLPPEEWDEIAERAGAAGIPPFMAAKM
EEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCHHHHHHHHHCCCCCCCHHHHHCC
RPWFLSLSMSVPLCARAIEDVTDGLDMKLMTLAERAGVETLSLEDPLGLFQLFDATPIEE
CCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHCCCCHHH
QIKELRSYIAMAGVGADDFYTMVESYFDGEVQAYVLLQLKQFLTSESDLSVAERQAQVDD
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LLEALLYQRNRDWIPVIEATAGNRLVIAVGAAHLPGEAGVLALLEAEGYQIEEALR
HHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCCHHHHCC
>Mature Secondary Structure
MLSRAQRSGDRRHALGHSGAVPATLRPFLSLICFCLVAVWMATPLRAACSGLDLRESAAP
CCCCCHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHCCC
GMWAEIEAEIALTPFARGLSWVATRGDRRLHIIGTMHLNDPRHDALVAHMAPAIQAADAV
CCCEEEEEEEEECHHHHCHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
LLEVNRADKARLERTLAETPSLIFITEGPTLIDRLPPEEWDEIAERAGAAGIPPFMAAKM
EEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCHHHHHHHHHCCCCCCCHHHHHCC
RPWFLSLSMSVPLCARAIEDVTDGLDMKLMTLAERAGVETLSLEDPLGLFQLFDATPIEE
CCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHCCCCHHH
QIKELRSYIAMAGVGADDFYTMVESYFDGEVQAYVLLQLKQFLTSESDLSVAERQAQVDD
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LLEALLYQRNRDWIPVIEATAGNRLVIAVGAAHLPGEAGVLALLEAEGYQIEEALR
HHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA