| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080427
Identifier: 99080427
GI number: 99080427
Start: 626316
End: 627305
Strand: Reverse
Name: 99080427
Synonym: TM1040_0586
Alternate gene names: NA
Gene position: 627305-626316 (Counterclockwise)
Preceding gene: 99080428
Following gene: 99080426
Centisome position: 19.6
GC content: 59.29
Gene sequence:
>990_bases ATGCCCCGGCAGGTCTTTAACATCCTCATTGTCGGCCAGTCCGGTCGCCTGATGTTCGAAGCACTGTTGTTTGCGGCATC CCTGCGCCAGAAGAGCCCAGCCTTCGAAGGTCGCCTGATCGTCGCGACGCCTGAGCCGGGCTCTCTTTGGACCTCGAACC CCACGATCCGCAACGGTGGCGTCCTCGAGGCACTGGCGCGTCTTGAGGCAGAGGTAATCCCATTTGAGAGCCGCCACTTC GGTCAGGCTTATCCATATGGCAACAAAATCGAAGCACTCTCGGTGCTGCCCGAAGGCGAGCCTTTTGTCTTTTTTGACAC GGACACGCTGCTCACAGGCGAGATCGATGCCGTCCCGTTTGACTTTGACCGCCCCTCTGCAAGCCTACGCCGCGAGGGCA CCTGGCCCAAGCCCACGCTCTACGGTCCCGGCTATACCGAAATCTGGCGCAGCCTCTACGCGCGTTTTGGGTTGGACTTC GAAAGCAGCCTCGATCTATCCCAACCCGATGAACATTGGAGACGCTATCTCTACTTTAATGCGGGCTATTTCTATGGCGC CTGTCCGCACCGCTTTGGGACGCGGTTTCTGGAATACGCGTTATCGATCCGCGATGATCTCCCGCCGGCCCTCATCGGCC AGTCGCTCGACCCCTGGCTCGATCAGATAGCCCTGCCGCTGGTGATCCACTCCTTTGGTGGCGCGCGCGACAGCCTGCCA CAAGGCCATCTGGATGGCAGCAAAAGCTGCCACTATCGCAGCTTCCCGCTCCTTTATGCCCGCGAACGTGATAAGGTGAT CGCCACGCTTGAGGAGGTCTGCGCTCCAAACTGGCTCAAGAAAGTCCTTAAAGGTTATGAGCCGATCAAACGGATGGTCT ATCAGGGCAGAGGTCAGCGTGTCCGCGCCCTCTTTGACCAGCACAACCTCCCGCGCAAAGAGCAGGCCATCCGCAACCGG ATCAAATCCGCAGGTCTCTGGATGCGCTGA
Upstream 100 bases:
>100_bases GATAGACCCTCTGCCGGTTGCAGCGACCAAAGGTGTTTACCCGCGCGAGGTGCGGCGATAGGAAGAACGGGCAAATTCCC TAGGTTGCAAAGCGAGCGTC
Downstream 100 bases:
>100_bases ACGCGCACTTGCACCCCGTGTCAGAACATATGTCCTCTGTCGCTGGCCAAATTCGGAGAATCCTTCTACCGGCTTTTGCT TGCACTGACGCCGCGCCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MPRQVFNILIVGQSGRLMFEALLFAASLRQKSPAFEGRLIVATPEPGSLWTSNPTIRNGGVLEALARLEAEVIPFESRHF GQAYPYGNKIEALSVLPEGEPFVFFDTDTLLTGEIDAVPFDFDRPSASLRREGTWPKPTLYGPGYTEIWRSLYARFGLDF ESSLDLSQPDEHWRRYLYFNAGYFYGACPHRFGTRFLEYALSIRDDLPPALIGQSLDPWLDQIALPLVIHSFGGARDSLP QGHLDGSKSCHYRSFPLLYARERDKVIATLEEVCAPNWLKKVLKGYEPIKRMVYQGRGQRVRALFDQHNLPRKEQAIRNR IKSAGLWMR
Sequences:
>Translated_329_residues MPRQVFNILIVGQSGRLMFEALLFAASLRQKSPAFEGRLIVATPEPGSLWTSNPTIRNGGVLEALARLEAEVIPFESRHF GQAYPYGNKIEALSVLPEGEPFVFFDTDTLLTGEIDAVPFDFDRPSASLRREGTWPKPTLYGPGYTEIWRSLYARFGLDF ESSLDLSQPDEHWRRYLYFNAGYFYGACPHRFGTRFLEYALSIRDDLPPALIGQSLDPWLDQIALPLVIHSFGGARDSLP QGHLDGSKSCHYRSFPLLYARERDKVIATLEEVCAPNWLKKVLKGYEPIKRMVYQGRGQRVRALFDQHNLPRKEQAIRNR IKSAGLWMR >Mature_328_residues PRQVFNILIVGQSGRLMFEALLFAASLRQKSPAFEGRLIVATPEPGSLWTSNPTIRNGGVLEALARLEAEVIPFESRHFG QAYPYGNKIEALSVLPEGEPFVFFDTDTLLTGEIDAVPFDFDRPSASLRREGTWPKPTLYGPGYTEIWRSLYARFGLDFE SSLDLSQPDEHWRRYLYFNAGYFYGACPHRFGTRFLEYALSIRDDLPPALIGQSLDPWLDQIALPLVIHSFGGARDSLPQ GHLDGSKSCHYRSFPLLYARERDKVIATLEEVCAPNWLKKVLKGYEPIKRMVYQGRGQRVRALFDQHNLPRKEQAIRNRI KSAGLWMR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37527; Mature: 37396
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRQVFNILIVGQSGRLMFEALLFAASLRQKSPAFEGRLIVATPEPGSLWTSNPTIRNGG CCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCH VLEALARLEAEVIPFESRHFGQAYPYGNKIEALSVLPEGEPFVFFDTDTLLTGEIDAVPF HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCEEEECCCCCCCC DFDRPSASLRREGTWPKPTLYGPGYTEIWRSLYARFGLDFESSLDLSQPDEHWRRYLYFN CCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEEEEEE AGYFYGACPHRFGTRFLEYALSIRDDLPPALIGQSLDPWLDQIALPLVIHSFGGARDSLP CCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCC QGHLDGSKSCHYRSFPLLYARERDKVIATLEEVCAPNWLKKVLKGYEPIKRMVYQGRGQR CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHH VRALFDQHNLPRKEQAIRNRIKSAGLWMR HHHHHHHCCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PRQVFNILIVGQSGRLMFEALLFAASLRQKSPAFEGRLIVATPEPGSLWTSNPTIRNGG CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCH VLEALARLEAEVIPFESRHFGQAYPYGNKIEALSVLPEGEPFVFFDTDTLLTGEIDAVPF HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCEEEECCCCCCCC DFDRPSASLRREGTWPKPTLYGPGYTEIWRSLYARFGLDFESSLDLSQPDEHWRRYLYFN CCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEEEEEE AGYFYGACPHRFGTRFLEYALSIRDDLPPALIGQSLDPWLDQIALPLVIHSFGGARDSLP CCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCC QGHLDGSKSCHYRSFPLLYARERDKVIATLEEVCAPNWLKKVLKGYEPIKRMVYQGRGQR CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHH VRALFDQHNLPRKEQAIRNRIKSAGLWMR HHHHHHHCCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA