Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99080427

Identifier: 99080427

GI number: 99080427

Start: 626316

End: 627305

Strand: Reverse

Name: 99080427

Synonym: TM1040_0586

Alternate gene names: NA

Gene position: 627305-626316 (Counterclockwise)

Preceding gene: 99080428

Following gene: 99080426

Centisome position: 19.6

GC content: 59.29

Gene sequence:

>990_bases
ATGCCCCGGCAGGTCTTTAACATCCTCATTGTCGGCCAGTCCGGTCGCCTGATGTTCGAAGCACTGTTGTTTGCGGCATC
CCTGCGCCAGAAGAGCCCAGCCTTCGAAGGTCGCCTGATCGTCGCGACGCCTGAGCCGGGCTCTCTTTGGACCTCGAACC
CCACGATCCGCAACGGTGGCGTCCTCGAGGCACTGGCGCGTCTTGAGGCAGAGGTAATCCCATTTGAGAGCCGCCACTTC
GGTCAGGCTTATCCATATGGCAACAAAATCGAAGCACTCTCGGTGCTGCCCGAAGGCGAGCCTTTTGTCTTTTTTGACAC
GGACACGCTGCTCACAGGCGAGATCGATGCCGTCCCGTTTGACTTTGACCGCCCCTCTGCAAGCCTACGCCGCGAGGGCA
CCTGGCCCAAGCCCACGCTCTACGGTCCCGGCTATACCGAAATCTGGCGCAGCCTCTACGCGCGTTTTGGGTTGGACTTC
GAAAGCAGCCTCGATCTATCCCAACCCGATGAACATTGGAGACGCTATCTCTACTTTAATGCGGGCTATTTCTATGGCGC
CTGTCCGCACCGCTTTGGGACGCGGTTTCTGGAATACGCGTTATCGATCCGCGATGATCTCCCGCCGGCCCTCATCGGCC
AGTCGCTCGACCCCTGGCTCGATCAGATAGCCCTGCCGCTGGTGATCCACTCCTTTGGTGGCGCGCGCGACAGCCTGCCA
CAAGGCCATCTGGATGGCAGCAAAAGCTGCCACTATCGCAGCTTCCCGCTCCTTTATGCCCGCGAACGTGATAAGGTGAT
CGCCACGCTTGAGGAGGTCTGCGCTCCAAACTGGCTCAAGAAAGTCCTTAAAGGTTATGAGCCGATCAAACGGATGGTCT
ATCAGGGCAGAGGTCAGCGTGTCCGCGCCCTCTTTGACCAGCACAACCTCCCGCGCAAAGAGCAGGCCATCCGCAACCGG
ATCAAATCCGCAGGTCTCTGGATGCGCTGA

Upstream 100 bases:

>100_bases
GATAGACCCTCTGCCGGTTGCAGCGACCAAAGGTGTTTACCCGCGCGAGGTGCGGCGATAGGAAGAACGGGCAAATTCCC
TAGGTTGCAAAGCGAGCGTC

Downstream 100 bases:

>100_bases
ACGCGCACTTGCACCCCGTGTCAGAACATATGTCCTCTGTCGCTGGCCAAATTCGGAGAATCCTTCTACCGGCTTTTGCT
TGCACTGACGCCGCGCCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MPRQVFNILIVGQSGRLMFEALLFAASLRQKSPAFEGRLIVATPEPGSLWTSNPTIRNGGVLEALARLEAEVIPFESRHF
GQAYPYGNKIEALSVLPEGEPFVFFDTDTLLTGEIDAVPFDFDRPSASLRREGTWPKPTLYGPGYTEIWRSLYARFGLDF
ESSLDLSQPDEHWRRYLYFNAGYFYGACPHRFGTRFLEYALSIRDDLPPALIGQSLDPWLDQIALPLVIHSFGGARDSLP
QGHLDGSKSCHYRSFPLLYARERDKVIATLEEVCAPNWLKKVLKGYEPIKRMVYQGRGQRVRALFDQHNLPRKEQAIRNR
IKSAGLWMR

Sequences:

>Translated_329_residues
MPRQVFNILIVGQSGRLMFEALLFAASLRQKSPAFEGRLIVATPEPGSLWTSNPTIRNGGVLEALARLEAEVIPFESRHF
GQAYPYGNKIEALSVLPEGEPFVFFDTDTLLTGEIDAVPFDFDRPSASLRREGTWPKPTLYGPGYTEIWRSLYARFGLDF
ESSLDLSQPDEHWRRYLYFNAGYFYGACPHRFGTRFLEYALSIRDDLPPALIGQSLDPWLDQIALPLVIHSFGGARDSLP
QGHLDGSKSCHYRSFPLLYARERDKVIATLEEVCAPNWLKKVLKGYEPIKRMVYQGRGQRVRALFDQHNLPRKEQAIRNR
IKSAGLWMR
>Mature_328_residues
PRQVFNILIVGQSGRLMFEALLFAASLRQKSPAFEGRLIVATPEPGSLWTSNPTIRNGGVLEALARLEAEVIPFESRHFG
QAYPYGNKIEALSVLPEGEPFVFFDTDTLLTGEIDAVPFDFDRPSASLRREGTWPKPTLYGPGYTEIWRSLYARFGLDFE
SSLDLSQPDEHWRRYLYFNAGYFYGACPHRFGTRFLEYALSIRDDLPPALIGQSLDPWLDQIALPLVIHSFGGARDSLPQ
GHLDGSKSCHYRSFPLLYARERDKVIATLEEVCAPNWLKKVLKGYEPIKRMVYQGRGQRVRALFDQHNLPRKEQAIRNRI
KSAGLWMR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37527; Mature: 37396

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRQVFNILIVGQSGRLMFEALLFAASLRQKSPAFEGRLIVATPEPGSLWTSNPTIRNGG
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCH
VLEALARLEAEVIPFESRHFGQAYPYGNKIEALSVLPEGEPFVFFDTDTLLTGEIDAVPF
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCEEEECCCCCCCC
DFDRPSASLRREGTWPKPTLYGPGYTEIWRSLYARFGLDFESSLDLSQPDEHWRRYLYFN
CCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEEEEEE
AGYFYGACPHRFGTRFLEYALSIRDDLPPALIGQSLDPWLDQIALPLVIHSFGGARDSLP
CCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCC
QGHLDGSKSCHYRSFPLLYARERDKVIATLEEVCAPNWLKKVLKGYEPIKRMVYQGRGQR
CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHH
VRALFDQHNLPRKEQAIRNRIKSAGLWMR
HHHHHHHCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PRQVFNILIVGQSGRLMFEALLFAASLRQKSPAFEGRLIVATPEPGSLWTSNPTIRNGG
CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCH
VLEALARLEAEVIPFESRHFGQAYPYGNKIEALSVLPEGEPFVFFDTDTLLTGEIDAVPF
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCEEEECCCCCCCC
DFDRPSASLRREGTWPKPTLYGPGYTEIWRSLYARFGLDFESSLDLSQPDEHWRRYLYFN
CCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEEEEEE
AGYFYGACPHRFGTRFLEYALSIRDDLPPALIGQSLDPWLDQIALPLVIHSFGGARDSLP
CCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCC
QGHLDGSKSCHYRSFPLLYARERDKVIATLEEVCAPNWLKKVLKGYEPIKRMVYQGRGQR
CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHH
VRALFDQHNLPRKEQAIRNRIKSAGLWMR
HHHHHHHCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA