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The map label for this gene is pepF2 [H]

Identifier: 99080410

GI number: 99080410

Start: 605508

End: 607328

Strand: Reverse

Name: pepF2 [H]

Synonym: TM1040_0569

Alternate gene names: 99080410

Gene position: 607328-605508 (Counterclockwise)

Preceding gene: 99080411

Following gene: 99080409

Centisome position: 18.97

GC content: 58.37

Gene sequence:

>1821_bases
ATGTTCCAACTCCCTTTCCCTGTGCGCGATGCCAATGCCTCTTCCGGAGCCGGTGATCTTGGCAAATTGCCGGAGTGGGA
TCTGAGCGATCTCTACGCAGGCGAAGACGCTGCGGAACTTTCCCGCGATCTGGACTGGCTGCAGGGTGAATGCGCTGCCT
TTGCCGCCGACTACGAGGGCAAGCTTGCAGAGCTCGACGCCGAGGGGCTTCTGACCTGCGTCCATCGCAACGAAAAAATC
AACAATATCGCCGGGCGCATCATGTCCTATGCGGGCCTGCGCTATTACCAGCTGACAACCGACGCGGACCGCGCCAAATT
CCTCTCTGACGTGCAGGAGAAAGTCACGGTCTTCACCACGCCGCTGGTGTTCTTCACGCTGGAAATCAACCGCATCGAGG
ATGCCAAACTCGACGCGCTCTTTGAGGCAAACGCCGATCTGGCGCGCTACAAACCCGTTTTTGACCGGATCCGCGCGATG
AAGCCCTATCAGCTCTCGGATGAGCTGGAGCGTTTTATGCACGACCTCGGGATTGTGGGCGATGCCTGGGAAAAGCTCTT
TGACGAGACCATCGCAGGGCTGACCTTTGAGATCGAGGGCGAAGAGCTCGGCATCGAGGCGACGCTCAACTTCCTGACCG
AGCAGGACCGCAGCAAGCGCGAAGCCGCAGCGCGCGAACTTGCCCGCGTCTTTGCCGACAACATCAAGATCTTTGCCCGC
GTTCACAACACGCAGGCCAAAGAGAAAGAGATCATTGACCGCTGGCGCGGCATGCCGAGCCCGCAGATGGGCCGGCACCT
CTCGAACGATGTCGAGCCCGAAGTGGTCGAAGCTCTGCGCGAGGCCGTAGTGGCCGCCTACCCCAAGCTTTCGCACCGCT
ACTATGAGCTCAAACGCAAATGGCTCGGTCTCGATCGCATGCAGGTCTGGGATCGCAACGCGCCTCTGCCGATGGAAACC
ACCCGCGTGGTGGACTGGGAGGAGGCCCGCGCAACCGTGATGGAGGCCTATGAGGCCTTTGATCCACGCATGGGCGAGCT
GGCGCAGCCGTTTTTCGACAAGGGCTGGATCGACGCAGGCGTCAAACCCGGCAAAGCCCCCGGTGCATTTGCTCATCCAA
CAGTGACCAATGTCCATCCGTATGTGATGCTGAACTACCTGGGCAAACCGCGTGACGTGATGACGCTGGCGCATGAACTT
GGCCACGGTGTTCATCAGGTTCTTGCCGCAGATCAGGGCGAGATGCTCTCTTCGACACCCCTGACCCTTGCGGAAACCGC
ATCGGTCTTTGGCGAGATGCTCACTTTCCGCAAGATGCTCGAAAAGGCCCAGACCAAAGAAGAGCGCAAGGTGCTCTTGG
CAGGCAAGGTCGAGGACATGATCAACACGGTCGTGCGCCAGATCGCCTTTTATGACTTTGAGTGCAAACTACACGCCGCA
CGCGCCGAAGGTGAGCTTACGCCCGAAGACATCAACGCCCTCTGGATGAGTGTGCAAGCGGAGTCCCTGGGCGAGTCCTT
TGACTTCATGGAAGGGTATGAGACCTTCTGGGCCTATATTCCGCACTTCGTCCACTCGCCCTTCTACGTCTATGCCTATG
CATTTGGCGATGGCCTCGTGAACGCGCTTTACTCGGTCTATGCCGAAGGGGCCGAGGGATTTGAGGACAAGTATTTCGAC
ATGCTCAAGGCTGGCGGGTCCAAACATCACAAAGAGCTTTTGGCACCATTTGGTCTTGATGCCTCTGACCCCAAGTTCTG
GGACAAAGGCCTGTCGATGATCTCTGGCCTGATTGACGAGCTTGAGGCAATGGAAGCTTGA

Upstream 100 bases:

>100_bases
CGCTTGCCCGACCTAAGTGTTTGAAGAACAGATCCACGGGAGCGCGCGCCGCTTTTTGCTGCGCGCCTGCGCCCAAATTC
AGACATCAGACGGAGGTCAC

Downstream 100 bases:

>100_bases
TCCGGAGTTAGGCTTCTCGGTAATTTGAAATGGCTCCCATTTGGGAGCCATTTTTACATCAGGAACGATTTTCTCATGGC
GATTTTAACTTCAAGCGACT

Product: peptidase M3B, oligoendopeptidase-related clade 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 606; Mature: 606

Protein sequence:

>606_residues
MFQLPFPVRDANASSGAGDLGKLPEWDLSDLYAGEDAAELSRDLDWLQGECAAFAADYEGKLAELDAEGLLTCVHRNEKI
NNIAGRIMSYAGLRYYQLTTDADRAKFLSDVQEKVTVFTTPLVFFTLEINRIEDAKLDALFEANADLARYKPVFDRIRAM
KPYQLSDELERFMHDLGIVGDAWEKLFDETIAGLTFEIEGEELGIEATLNFLTEQDRSKREAAARELARVFADNIKIFAR
VHNTQAKEKEIIDRWRGMPSPQMGRHLSNDVEPEVVEALREAVVAAYPKLSHRYYELKRKWLGLDRMQVWDRNAPLPMET
TRVVDWEEARATVMEAYEAFDPRMGELAQPFFDKGWIDAGVKPGKAPGAFAHPTVTNVHPYVMLNYLGKPRDVMTLAHEL
GHGVHQVLAADQGEMLSSTPLTLAETASVFGEMLTFRKMLEKAQTKEERKVLLAGKVEDMINTVVRQIAFYDFECKLHAA
RAEGELTPEDINALWMSVQAESLGESFDFMEGYETFWAYIPHFVHSPFYVYAYAFGDGLVNALYSVYAEGAEGFEDKYFD
MLKAGGSKHHKELLAPFGLDASDPKFWDKGLSMISGLIDELEAMEA

Sequences:

>Translated_606_residues
MFQLPFPVRDANASSGAGDLGKLPEWDLSDLYAGEDAAELSRDLDWLQGECAAFAADYEGKLAELDAEGLLTCVHRNEKI
NNIAGRIMSYAGLRYYQLTTDADRAKFLSDVQEKVTVFTTPLVFFTLEINRIEDAKLDALFEANADLARYKPVFDRIRAM
KPYQLSDELERFMHDLGIVGDAWEKLFDETIAGLTFEIEGEELGIEATLNFLTEQDRSKREAAARELARVFADNIKIFAR
VHNTQAKEKEIIDRWRGMPSPQMGRHLSNDVEPEVVEALREAVVAAYPKLSHRYYELKRKWLGLDRMQVWDRNAPLPMET
TRVVDWEEARATVMEAYEAFDPRMGELAQPFFDKGWIDAGVKPGKAPGAFAHPTVTNVHPYVMLNYLGKPRDVMTLAHEL
GHGVHQVLAADQGEMLSSTPLTLAETASVFGEMLTFRKMLEKAQTKEERKVLLAGKVEDMINTVVRQIAFYDFECKLHAA
RAEGELTPEDINALWMSVQAESLGESFDFMEGYETFWAYIPHFVHSPFYVYAYAFGDGLVNALYSVYAEGAEGFEDKYFD
MLKAGGSKHHKELLAPFGLDASDPKFWDKGLSMISGLIDELEAMEA
>Mature_606_residues
MFQLPFPVRDANASSGAGDLGKLPEWDLSDLYAGEDAAELSRDLDWLQGECAAFAADYEGKLAELDAEGLLTCVHRNEKI
NNIAGRIMSYAGLRYYQLTTDADRAKFLSDVQEKVTVFTTPLVFFTLEINRIEDAKLDALFEANADLARYKPVFDRIRAM
KPYQLSDELERFMHDLGIVGDAWEKLFDETIAGLTFEIEGEELGIEATLNFLTEQDRSKREAAARELARVFADNIKIFAR
VHNTQAKEKEIIDRWRGMPSPQMGRHLSNDVEPEVVEALREAVVAAYPKLSHRYYELKRKWLGLDRMQVWDRNAPLPMET
TRVVDWEEARATVMEAYEAFDPRMGELAQPFFDKGWIDAGVKPGKAPGAFAHPTVTNVHPYVMLNYLGKPRDVMTLAHEL
GHGVHQVLAADQGEMLSSTPLTLAETASVFGEMLTFRKMLEKAQTKEERKVLLAGKVEDMINTVVRQIAFYDFECKLHAA
RAEGELTPEDINALWMSVQAESLGESFDFMEGYETFWAYIPHFVHSPFYVYAYAFGDGLVNALYSVYAEGAEGFEDKYFD
MLKAGGSKHHKELLAPFGLDASDPKFWDKGLSMISGLIDELEAMEA

Specific function: Hydrolyzes peptides containing between 7 and 17 amino acids with a rather wide specificity [H]

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 68456; Mature: 68456

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQLPFPVRDANASSGAGDLGKLPEWDLSDLYAGEDAAELSRDLDWLQGECAAFAADYEG
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCHHHHHHCCCCC
KLAELDAEGLLTCVHRNEKINNIAGRIMSYAGLRYYQLTTDADRAKFLSDVQEKVTVFTT
CHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHEE
PLVFFTLEINRIEDAKLDALFEANADLARYKPVFDRIRAMKPYQLSDELERFMHDLGIVG
CEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
DAWEKLFDETIAGLTFEIEGEELGIEATLNFLTEQDRSKREAAARELARVFADNIKIFAR
HHHHHHHHHHHCCCEEEECCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEE
VHNTQAKEKEIIDRWRGMPSPQMGRHLSNDVEPEVVEALREAVVAAYPKLSHRYYELKRK
ECCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLGLDRMQVWDRNAPLPMETTRVVDWEEARATVMEAYEAFDPRMGELAQPFFDKGWIDAG
HHCCHHHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
VKPGKAPGAFAHPTVTNVHPYVMLNYLGKPRDVMTLAHELGHGVHQVLAADQGEMLSSTP
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LTLAETASVFGEMLTFRKMLEKAQTKEERKVLLAGKVEDMINTVVRQIAFYDFECKLHAA
CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
RAEGELTPEDINALWMSVQAESLGESFDFMEGYETFWAYIPHFVHSPFYVYAYAFGDGLV
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH
NALYSVYAEGAEGFEDKYFDMLKAGGSKHHKELLAPFGLDASDPKFWDKGLSMISGLIDE
HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
LEAMEA
HHHHCC
>Mature Secondary Structure
MFQLPFPVRDANASSGAGDLGKLPEWDLSDLYAGEDAAELSRDLDWLQGECAAFAADYEG
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCHHHHHHCCCCC
KLAELDAEGLLTCVHRNEKINNIAGRIMSYAGLRYYQLTTDADRAKFLSDVQEKVTVFTT
CHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHEE
PLVFFTLEINRIEDAKLDALFEANADLARYKPVFDRIRAMKPYQLSDELERFMHDLGIVG
CEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
DAWEKLFDETIAGLTFEIEGEELGIEATLNFLTEQDRSKREAAARELARVFADNIKIFAR
HHHHHHHHHHHCCCEEEECCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEE
VHNTQAKEKEIIDRWRGMPSPQMGRHLSNDVEPEVVEALREAVVAAYPKLSHRYYELKRK
ECCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLGLDRMQVWDRNAPLPMETTRVVDWEEARATVMEAYEAFDPRMGELAQPFFDKGWIDAG
HHCCHHHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
VKPGKAPGAFAHPTVTNVHPYVMLNYLGKPRDVMTLAHELGHGVHQVLAADQGEMLSSTP
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LTLAETASVFGEMLTFRKMLEKAQTKEERKVLLAGKVEDMINTVVRQIAFYDFECKLHAA
CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
RAEGELTPEDINALWMSVQAESLGESFDFMEGYETFWAYIPHFVHSPFYVYAYAFGDGLV
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH
NALYSVYAEGAEGFEDKYFDMLKAGGSKHHKELLAPFGLDASDPKFWDKGLSMISGLIDE
HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
LEAMEA
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9209029 [H]