Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080372

Identifier: 99080372

GI number: 99080372

Start: 559749

End: 562301

Strand: Reverse

Name: 99080372

Synonym: TM1040_0531

Alternate gene names: NA

Gene position: 562301-559749 (Counterclockwise)

Preceding gene: 99080377

Following gene: 99080371

Centisome position: 17.57

GC content: 60.01

Gene sequence:

>2553_bases
ATGAGCACCGTTGCATATATTACCCGCAACGCTTCGGGTACGAACCAGCATGGGACCTCTGCAGAAGGTTCCCCCTCCGT
CATTCCGACCAATGGCGCGACGGATATTTCCCTCAATCTCGATCCCAGCGACGTACAGAGTTACGCGCGGCGCGGTCGCG
ATCTTCACATTACATTGTTTGATGGGACCGTTGTCGAGTTGGAGGGGTTCTATGATCCCGTCGCGACCGGGTCCAAAAAC
CTCTTCCTCAGTGACGGGGGCGATTTCATCGAAGTCGTGCTTGAAGACAAGGCCGACGGGATGCTGTTTGCCAGCTACGA
GCCGATTGATATCTCCGGCAAGTGGAGCGCCTACGACGACATGGTCTTCCTTGATGTGGACCGGATCGAACCCGTGGTTG
CGCCCCTGGCGGCACCGCTGCTTGGCGGTCTCGGCGGGCTCGGCGCAGCAGCGGCAGGCGCGGCGGTTCTTGTCGGCGGC
GGTGGCGGCGGTGGTGGAGACGGAGATGGCGCAATCGTGCCAACCGTCGACGACGCCGATGGCACCTATGATGTTCCTGA
GGGCGACCCTGACGGGGTGACCATCACCGGCACCGGCGAGGCAGGCTCTACGGTAGAAGTCGATATTGGCGGTGTCACCG
GCACCACAACAGTGGGCGAGGATGGCACCTGGTCGGTGGACTTCCCAACTTCGGATCTACCGGGGGACGGCGTCTATGAA
ACTGTCGTGGACGTGGTTGCGCCAGACGGCACCACCTACGACGATCTTGATGGCCCCACCATCGACATCGATACCGAAGC
GCCGACTGTGATCGTCACCGAAGGCACCAAATCCGTGAATGACATCGTCAATGGCGACGAACAGGAAAGCGGGACGATCA
TCAGCGGTACCGGTGAGGCGGGCGCAACGGTCACACTTGTGATCGAGGGCCACAGCCAGACCACAACCGTCGATGAGAAT
GGCAACTGGACGGTGACGTTCAGCTCCGATGAAATCGATACCGGCGAGTACGAAACAGACATCGAGATCACGACCACCGA
TCCGCACGGCAACTCCACCGTGAGCAGCGATGTGCTGGTAGTGGACACCGAAACAACGGTGGCAATCGACACGGGTCTTG
CGGGGGGCGATGATCTGATCAACGCCGCCGAGGCCGCAGCCGCCGCGGGTGTTGCGATCACCGGCACTGCAGAAGCAGGC
GCCGCCGTCGAGGTGGTGGTCGAGGGGGTAACCCGCACGACCACCGCCGACAGCAACGGCACATGGTCCGTCATCTATGA
GGCGGGCACCTTGCCCAGTGGCACCTATGACGCTGATATTTCGGTCACATCGACCGATACTGCAGGCAACAGCGCCACTG
CCGACTCGACCATTGCGGTCGATACCGAGGCTGGTTTTGTTCAACTGAGCGATGATCCCATCGAAACCGATGATGTGATC
AACGAAGACGAGCGCGCCGATGGCGTGACCATCACCGGCACCGCAACGCCCGGCGAGACAGTGACCGTCCAGCTTGGAAC
GGCGCAGGGCACGGTGGTTGCGGATTCCAACGGTGATTGGTCCTATGATTTTGCCGCCAGCGAAATCCCCGAAGGCACCG
GCGATCTCGACATCTCGGCGACGATTCAGGACAGCGCAGGCAATACTGCAAGCGATACCGACACCGTGGCCTATGATACC
GAAGTGACCAACTACACCTCGGCAGATCAGAACGATACCGTGGGTGTGAACCTTCAGCAGATGCAGCAGGGCTTCACCTT
GCAAGGCACCGTTGAAGAGGGATCCAGTGTCTCGGTTGAGATCAACGGCACGACCCATGACGCCGTGGTCGACAGCAGCG
GCAACTGGAGCCTGACCGTAGATGGCGATGACATCGGCAGTTTCTCGCAGGGCGGACTGGTCGCGACCGTGACCGCGACC
GATCCGGCGGGCAACGTCGACACACTCATGCAGCCGATCGACATCGATACGCTCTATGAAACGCCAGAGTTTGCAGGCAC
CACGACAATCGCGGGCCAAATCCAGAGTATCTTCCTCGATGAATCCGATGATGCCCTGACGATGTATTCGCTGGACAGCA
GCGGCAATGCAACGCAACTGGACGCGACCGAGACGTCCTCGGGGATTTCGGGTGTTGATAAACTCGACCTTGACACTCCG
ATCTCGGATGGCGCCAACCTGATCGTGCAAAGCACGGATGATGCCGGCAACAAATCCTCGACCCTCGTGATCGACCAGGA
GAACCCTACATCGAGCCTGCTCTCCGGACTCGATGGGTTCAACATCGATGCCATCGACCTTGTGTTCGAAGATGGCACCG
ACGGTGCAAACCTTGTGCTCACCGAGGCGCTGATCAAGGAGATGTCGGACAACTCCGACACCTTGACCATCCGCGCGGAT
GAGCTGGCGAATGTGACCCATGAGGTCACGCTGACAGGCGCGACGGAGATCACCTCTACCGTGAGCGGCTACAGCGCCTA
TTCGATCGGCGATGCCACCGTGTTGATCGAAGAAGACGCCGGCATCAGCCTGAACGGCACACCGGTCATCTAA

Upstream 100 bases:

>100_bases
AACGCCGCAAAGACGGCACAAGGCAGACACATACAGGCTAATGAACCCAGCGGCGCGAGGTAAGTCTCTCCGCGTGCGCT
TATAAAGTGAGCAGTTGAGC

Downstream 100 bases:

>100_bases
GACAGCTCCGCGCAGCCCCTTGCTGCCTCTTCAGGCAAGGCTACGGGCTGCGCGCACGCAATAACCCACGGACAAACCGC
GGGACAGTTTGAGGCACGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 850; Mature: 849

Protein sequence:

>850_residues
MSTVAYITRNASGTNQHGTSAEGSPSVIPTNGATDISLNLDPSDVQSYARRGRDLHITLFDGTVVELEGFYDPVATGSKN
LFLSDGGDFIEVVLEDKADGMLFASYEPIDISGKWSAYDDMVFLDVDRIEPVVAPLAAPLLGGLGGLGAAAAGAAVLVGG
GGGGGGDGDGAIVPTVDDADGTYDVPEGDPDGVTITGTGEAGSTVEVDIGGVTGTTTVGEDGTWSVDFPTSDLPGDGVYE
TVVDVVAPDGTTYDDLDGPTIDIDTEAPTVIVTEGTKSVNDIVNGDEQESGTIISGTGEAGATVTLVIEGHSQTTTVDEN
GNWTVTFSSDEIDTGEYETDIEITTTDPHGNSTVSSDVLVVDTETTVAIDTGLAGGDDLINAAEAAAAAGVAITGTAEAG
AAVEVVVEGVTRTTTADSNGTWSVIYEAGTLPSGTYDADISVTSTDTAGNSATADSTIAVDTEAGFVQLSDDPIETDDVI
NEDERADGVTITGTATPGETVTVQLGTAQGTVVADSNGDWSYDFAASEIPEGTGDLDISATIQDSAGNTASDTDTVAYDT
EVTNYTSADQNDTVGVNLQQMQQGFTLQGTVEEGSSVSVEINGTTHDAVVDSSGNWSLTVDGDDIGSFSQGGLVATVTAT
DPAGNVDTLMQPIDIDTLYETPEFAGTTTIAGQIQSIFLDESDDALTMYSLDSSGNATQLDATETSSGISGVDKLDLDTP
ISDGANLIVQSTDDAGNKSSTLVIDQENPTSSLLSGLDGFNIDAIDLVFEDGTDGANLVLTEALIKEMSDNSDTLTIRAD
ELANVTHEVTLTGATEITSTVSGYSAYSIGDATVLIEEDAGISLNGTPVI

Sequences:

>Translated_850_residues
MSTVAYITRNASGTNQHGTSAEGSPSVIPTNGATDISLNLDPSDVQSYARRGRDLHITLFDGTVVELEGFYDPVATGSKN
LFLSDGGDFIEVVLEDKADGMLFASYEPIDISGKWSAYDDMVFLDVDRIEPVVAPLAAPLLGGLGGLGAAAAGAAVLVGG
GGGGGGDGDGAIVPTVDDADGTYDVPEGDPDGVTITGTGEAGSTVEVDIGGVTGTTTVGEDGTWSVDFPTSDLPGDGVYE
TVVDVVAPDGTTYDDLDGPTIDIDTEAPTVIVTEGTKSVNDIVNGDEQESGTIISGTGEAGATVTLVIEGHSQTTTVDEN
GNWTVTFSSDEIDTGEYETDIEITTTDPHGNSTVSSDVLVVDTETTVAIDTGLAGGDDLINAAEAAAAAGVAITGTAEAG
AAVEVVVEGVTRTTTADSNGTWSVIYEAGTLPSGTYDADISVTSTDTAGNSATADSTIAVDTEAGFVQLSDDPIETDDVI
NEDERADGVTITGTATPGETVTVQLGTAQGTVVADSNGDWSYDFAASEIPEGTGDLDISATIQDSAGNTASDTDTVAYDT
EVTNYTSADQNDTVGVNLQQMQQGFTLQGTVEEGSSVSVEINGTTHDAVVDSSGNWSLTVDGDDIGSFSQGGLVATVTAT
DPAGNVDTLMQPIDIDTLYETPEFAGTTTIAGQIQSIFLDESDDALTMYSLDSSGNATQLDATETSSGISGVDKLDLDTP
ISDGANLIVQSTDDAGNKSSTLVIDQENPTSSLLSGLDGFNIDAIDLVFEDGTDGANLVLTEALIKEMSDNSDTLTIRAD
ELANVTHEVTLTGATEITSTVSGYSAYSIGDATVLIEEDAGISLNGTPVI
>Mature_849_residues
STVAYITRNASGTNQHGTSAEGSPSVIPTNGATDISLNLDPSDVQSYARRGRDLHITLFDGTVVELEGFYDPVATGSKNL
FLSDGGDFIEVVLEDKADGMLFASYEPIDISGKWSAYDDMVFLDVDRIEPVVAPLAAPLLGGLGGLGAAAAGAAVLVGGG
GGGGGDGDGAIVPTVDDADGTYDVPEGDPDGVTITGTGEAGSTVEVDIGGVTGTTTVGEDGTWSVDFPTSDLPGDGVYET
VVDVVAPDGTTYDDLDGPTIDIDTEAPTVIVTEGTKSVNDIVNGDEQESGTIISGTGEAGATVTLVIEGHSQTTTVDENG
NWTVTFSSDEIDTGEYETDIEITTTDPHGNSTVSSDVLVVDTETTVAIDTGLAGGDDLINAAEAAAAAGVAITGTAEAGA
AVEVVVEGVTRTTTADSNGTWSVIYEAGTLPSGTYDADISVTSTDTAGNSATADSTIAVDTEAGFVQLSDDPIETDDVIN
EDERADGVTITGTATPGETVTVQLGTAQGTVVADSNGDWSYDFAASEIPEGTGDLDISATIQDSAGNTASDTDTVAYDTE
VTNYTSADQNDTVGVNLQQMQQGFTLQGTVEEGSSVSVEINGTTHDAVVDSSGNWSLTVDGDDIGSFSQGGLVATVTATD
PAGNVDTLMQPIDIDTLYETPEFAGTTTIAGQIQSIFLDESDDALTMYSLDSSGNATQLDATETSSGISGVDKLDLDTPI
SDGANLIVQSTDDAGNKSSTLVIDQENPTSSLLSGLDGFNIDAIDLVFEDGTDGANLVLTEALIKEMSDNSDTLTIRADE
LANVTHEVTLTGATEITSTVSGYSAYSIGDATVLIEEDAGISLNGTPVI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86474; Mature: 86343

Theoretical pI: Translated: 3.18; Mature: 3.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVAYITRNASGTNQHGTSAEGSPSVIPTNGATDISLNLDPSDVQSYARRGRDLHITLF
CCEEEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHCCCEEEEEEE
DGTVVELEGFYDPVATGSKNLFLSDGGDFIEVVLEDKADGMLFASYEPIDISGKWSAYDD
CCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEECCCEECCCCCCCCCC
MVFLDVDRIEPVVAPLAAPLLGGLGGLGAAAAGAAVLVGGGGGGGGDGDGAIVPTVDDAD
EEEEEHHHCCHHHHHHHHHHHHCCCCCCHHCCCCEEEEECCCCCCCCCCCEEEEEECCCC
GTYDVPEGDPDGVTITGTGEAGSTVEVDIGGVTGTTTVGEDGTWSVDFPTSDLPGDGVYE
CCEECCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
TVVDVVAPDGTTYDDLDGPTIDIDTEAPTVIVTEGTKSVNDIVNGDEQESGTIISGTGEA
HHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHCCCCCCCCCEEEEECCCC
GATVTLVIEGHSQTTTVDENGNWTVTFSSDEIDTGEYETDIEITTTDPHGNSTVSSDVLV
CCEEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEE
VDTETTVAIDTGLAGGDDLINAAEAAAAAGVAITGTAEAGAAVEVVVEGVTRTTTADSNG
EECCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCEEEEECCCCC
TWSVIYEAGTLPSGTYDADISVTSTDTAGNSATADSTIAVDTEAGFVQLSDDPIETDDVI
EEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCC
NEDERADGVTITGTATPGETVTVQLGTAQGTVVADSNGDWSYDFAASEIPEGTGDLDISA
CCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEECCCCCEEEECCHHHCCCCCCCEEEEE
TIQDSAGNTASDTDTVAYDTEVTNYTSADQNDTVGVNLQQMQQGFTLQGTVEEGSSVSVE
EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCEECCCHHHHHCCCEEEEEECCCCEEEEE
INGTTHDAVVDSSGNWSLTVDGDDIGSFSQGGLVATVTATDPAGNVDTLMQPIDIDTLYE
ECCCCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCHHHCC
TPEFAGTTTIAGQIQSIFLDESDDALTMYSLDSSGNATQLDATETSSGISGVDKLDLDTP
CCCCCCCEEEECEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC
ISDGANLIVQSTDDAGNKSSTLVIDQENPTSSLLSGLDGFNIDAIDLVFEDGTDGANLVL
CCCCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEE
TEALIKEMSDNSDTLTIRADELANVTHEVTLTGATEITSTVSGYSAYSIGDATVLIEEDA
HHHHHHHHCCCCCEEEEEEHHHCCCEEEEEEECCHHHHHHHCCCEEEEECCEEEEEECCC
GISLNGTPVI
CEECCCCCCC
>Mature Secondary Structure 
STVAYITRNASGTNQHGTSAEGSPSVIPTNGATDISLNLDPSDVQSYARRGRDLHITLF
CEEEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHCCCEEEEEEE
DGTVVELEGFYDPVATGSKNLFLSDGGDFIEVVLEDKADGMLFASYEPIDISGKWSAYDD
CCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEECCCEECCCCCCCCCC
MVFLDVDRIEPVVAPLAAPLLGGLGGLGAAAAGAAVLVGGGGGGGGDGDGAIVPTVDDAD
EEEEEHHHCCHHHHHHHHHHHHCCCCCCHHCCCCEEEEECCCCCCCCCCCEEEEEECCCC
GTYDVPEGDPDGVTITGTGEAGSTVEVDIGGVTGTTTVGEDGTWSVDFPTSDLPGDGVYE
CCEECCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
TVVDVVAPDGTTYDDLDGPTIDIDTEAPTVIVTEGTKSVNDIVNGDEQESGTIISGTGEA
HHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHCCCCCCCCCEEEEECCCC
GATVTLVIEGHSQTTTVDENGNWTVTFSSDEIDTGEYETDIEITTTDPHGNSTVSSDVLV
CCEEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEE
VDTETTVAIDTGLAGGDDLINAAEAAAAAGVAITGTAEAGAAVEVVVEGVTRTTTADSNG
EECCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCEEEEECCCCC
TWSVIYEAGTLPSGTYDADISVTSTDTAGNSATADSTIAVDTEAGFVQLSDDPIETDDVI
EEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCC
NEDERADGVTITGTATPGETVTVQLGTAQGTVVADSNGDWSYDFAASEIPEGTGDLDISA
CCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEECCCCCEEEECCHHHCCCCCCCEEEEE
TIQDSAGNTASDTDTVAYDTEVTNYTSADQNDTVGVNLQQMQQGFTLQGTVEEGSSVSVE
EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCEECCCHHHHHCCCEEEEEECCCCEEEEE
INGTTHDAVVDSSGNWSLTVDGDDIGSFSQGGLVATVTATDPAGNVDTLMQPIDIDTLYE
ECCCCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCHHHCC
TPEFAGTTTIAGQIQSIFLDESDDALTMYSLDSSGNATQLDATETSSGISGVDKLDLDTP
CCCCCCCEEEECEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC
ISDGANLIVQSTDDAGNKSSTLVIDQENPTSSLLSGLDGFNIDAIDLVFEDGTDGANLVL
CCCCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEE
TEALIKEMSDNSDTLTIRADELANVTHEVTLTGATEITSTVSGYSAYSIGDATVLIEEDA
HHHHHHHHCCCCCEEEEEEHHHCCCEEEEEEECCHHHHHHHCCCEEEEECCEEEEEECCC
GISLNGTPVI
CEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA