| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080372
Identifier: 99080372
GI number: 99080372
Start: 559749
End: 562301
Strand: Reverse
Name: 99080372
Synonym: TM1040_0531
Alternate gene names: NA
Gene position: 562301-559749 (Counterclockwise)
Preceding gene: 99080377
Following gene: 99080371
Centisome position: 17.57
GC content: 60.01
Gene sequence:
>2553_bases ATGAGCACCGTTGCATATATTACCCGCAACGCTTCGGGTACGAACCAGCATGGGACCTCTGCAGAAGGTTCCCCCTCCGT CATTCCGACCAATGGCGCGACGGATATTTCCCTCAATCTCGATCCCAGCGACGTACAGAGTTACGCGCGGCGCGGTCGCG ATCTTCACATTACATTGTTTGATGGGACCGTTGTCGAGTTGGAGGGGTTCTATGATCCCGTCGCGACCGGGTCCAAAAAC CTCTTCCTCAGTGACGGGGGCGATTTCATCGAAGTCGTGCTTGAAGACAAGGCCGACGGGATGCTGTTTGCCAGCTACGA GCCGATTGATATCTCCGGCAAGTGGAGCGCCTACGACGACATGGTCTTCCTTGATGTGGACCGGATCGAACCCGTGGTTG CGCCCCTGGCGGCACCGCTGCTTGGCGGTCTCGGCGGGCTCGGCGCAGCAGCGGCAGGCGCGGCGGTTCTTGTCGGCGGC GGTGGCGGCGGTGGTGGAGACGGAGATGGCGCAATCGTGCCAACCGTCGACGACGCCGATGGCACCTATGATGTTCCTGA GGGCGACCCTGACGGGGTGACCATCACCGGCACCGGCGAGGCAGGCTCTACGGTAGAAGTCGATATTGGCGGTGTCACCG GCACCACAACAGTGGGCGAGGATGGCACCTGGTCGGTGGACTTCCCAACTTCGGATCTACCGGGGGACGGCGTCTATGAA ACTGTCGTGGACGTGGTTGCGCCAGACGGCACCACCTACGACGATCTTGATGGCCCCACCATCGACATCGATACCGAAGC GCCGACTGTGATCGTCACCGAAGGCACCAAATCCGTGAATGACATCGTCAATGGCGACGAACAGGAAAGCGGGACGATCA TCAGCGGTACCGGTGAGGCGGGCGCAACGGTCACACTTGTGATCGAGGGCCACAGCCAGACCACAACCGTCGATGAGAAT GGCAACTGGACGGTGACGTTCAGCTCCGATGAAATCGATACCGGCGAGTACGAAACAGACATCGAGATCACGACCACCGA TCCGCACGGCAACTCCACCGTGAGCAGCGATGTGCTGGTAGTGGACACCGAAACAACGGTGGCAATCGACACGGGTCTTG CGGGGGGCGATGATCTGATCAACGCCGCCGAGGCCGCAGCCGCCGCGGGTGTTGCGATCACCGGCACTGCAGAAGCAGGC GCCGCCGTCGAGGTGGTGGTCGAGGGGGTAACCCGCACGACCACCGCCGACAGCAACGGCACATGGTCCGTCATCTATGA GGCGGGCACCTTGCCCAGTGGCACCTATGACGCTGATATTTCGGTCACATCGACCGATACTGCAGGCAACAGCGCCACTG CCGACTCGACCATTGCGGTCGATACCGAGGCTGGTTTTGTTCAACTGAGCGATGATCCCATCGAAACCGATGATGTGATC AACGAAGACGAGCGCGCCGATGGCGTGACCATCACCGGCACCGCAACGCCCGGCGAGACAGTGACCGTCCAGCTTGGAAC GGCGCAGGGCACGGTGGTTGCGGATTCCAACGGTGATTGGTCCTATGATTTTGCCGCCAGCGAAATCCCCGAAGGCACCG GCGATCTCGACATCTCGGCGACGATTCAGGACAGCGCAGGCAATACTGCAAGCGATACCGACACCGTGGCCTATGATACC GAAGTGACCAACTACACCTCGGCAGATCAGAACGATACCGTGGGTGTGAACCTTCAGCAGATGCAGCAGGGCTTCACCTT GCAAGGCACCGTTGAAGAGGGATCCAGTGTCTCGGTTGAGATCAACGGCACGACCCATGACGCCGTGGTCGACAGCAGCG GCAACTGGAGCCTGACCGTAGATGGCGATGACATCGGCAGTTTCTCGCAGGGCGGACTGGTCGCGACCGTGACCGCGACC GATCCGGCGGGCAACGTCGACACACTCATGCAGCCGATCGACATCGATACGCTCTATGAAACGCCAGAGTTTGCAGGCAC CACGACAATCGCGGGCCAAATCCAGAGTATCTTCCTCGATGAATCCGATGATGCCCTGACGATGTATTCGCTGGACAGCA GCGGCAATGCAACGCAACTGGACGCGACCGAGACGTCCTCGGGGATTTCGGGTGTTGATAAACTCGACCTTGACACTCCG ATCTCGGATGGCGCCAACCTGATCGTGCAAAGCACGGATGATGCCGGCAACAAATCCTCGACCCTCGTGATCGACCAGGA GAACCCTACATCGAGCCTGCTCTCCGGACTCGATGGGTTCAACATCGATGCCATCGACCTTGTGTTCGAAGATGGCACCG ACGGTGCAAACCTTGTGCTCACCGAGGCGCTGATCAAGGAGATGTCGGACAACTCCGACACCTTGACCATCCGCGCGGAT GAGCTGGCGAATGTGACCCATGAGGTCACGCTGACAGGCGCGACGGAGATCACCTCTACCGTGAGCGGCTACAGCGCCTA TTCGATCGGCGATGCCACCGTGTTGATCGAAGAAGACGCCGGCATCAGCCTGAACGGCACACCGGTCATCTAA
Upstream 100 bases:
>100_bases AACGCCGCAAAGACGGCACAAGGCAGACACATACAGGCTAATGAACCCAGCGGCGCGAGGTAAGTCTCTCCGCGTGCGCT TATAAAGTGAGCAGTTGAGC
Downstream 100 bases:
>100_bases GACAGCTCCGCGCAGCCCCTTGCTGCCTCTTCAGGCAAGGCTACGGGCTGCGCGCACGCAATAACCCACGGACAAACCGC GGGACAGTTTGAGGCACGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 850; Mature: 849
Protein sequence:
>850_residues MSTVAYITRNASGTNQHGTSAEGSPSVIPTNGATDISLNLDPSDVQSYARRGRDLHITLFDGTVVELEGFYDPVATGSKN LFLSDGGDFIEVVLEDKADGMLFASYEPIDISGKWSAYDDMVFLDVDRIEPVVAPLAAPLLGGLGGLGAAAAGAAVLVGG GGGGGGDGDGAIVPTVDDADGTYDVPEGDPDGVTITGTGEAGSTVEVDIGGVTGTTTVGEDGTWSVDFPTSDLPGDGVYE TVVDVVAPDGTTYDDLDGPTIDIDTEAPTVIVTEGTKSVNDIVNGDEQESGTIISGTGEAGATVTLVIEGHSQTTTVDEN GNWTVTFSSDEIDTGEYETDIEITTTDPHGNSTVSSDVLVVDTETTVAIDTGLAGGDDLINAAEAAAAAGVAITGTAEAG AAVEVVVEGVTRTTTADSNGTWSVIYEAGTLPSGTYDADISVTSTDTAGNSATADSTIAVDTEAGFVQLSDDPIETDDVI NEDERADGVTITGTATPGETVTVQLGTAQGTVVADSNGDWSYDFAASEIPEGTGDLDISATIQDSAGNTASDTDTVAYDT EVTNYTSADQNDTVGVNLQQMQQGFTLQGTVEEGSSVSVEINGTTHDAVVDSSGNWSLTVDGDDIGSFSQGGLVATVTAT DPAGNVDTLMQPIDIDTLYETPEFAGTTTIAGQIQSIFLDESDDALTMYSLDSSGNATQLDATETSSGISGVDKLDLDTP ISDGANLIVQSTDDAGNKSSTLVIDQENPTSSLLSGLDGFNIDAIDLVFEDGTDGANLVLTEALIKEMSDNSDTLTIRAD ELANVTHEVTLTGATEITSTVSGYSAYSIGDATVLIEEDAGISLNGTPVI
Sequences:
>Translated_850_residues MSTVAYITRNASGTNQHGTSAEGSPSVIPTNGATDISLNLDPSDVQSYARRGRDLHITLFDGTVVELEGFYDPVATGSKN LFLSDGGDFIEVVLEDKADGMLFASYEPIDISGKWSAYDDMVFLDVDRIEPVVAPLAAPLLGGLGGLGAAAAGAAVLVGG GGGGGGDGDGAIVPTVDDADGTYDVPEGDPDGVTITGTGEAGSTVEVDIGGVTGTTTVGEDGTWSVDFPTSDLPGDGVYE TVVDVVAPDGTTYDDLDGPTIDIDTEAPTVIVTEGTKSVNDIVNGDEQESGTIISGTGEAGATVTLVIEGHSQTTTVDEN GNWTVTFSSDEIDTGEYETDIEITTTDPHGNSTVSSDVLVVDTETTVAIDTGLAGGDDLINAAEAAAAAGVAITGTAEAG AAVEVVVEGVTRTTTADSNGTWSVIYEAGTLPSGTYDADISVTSTDTAGNSATADSTIAVDTEAGFVQLSDDPIETDDVI NEDERADGVTITGTATPGETVTVQLGTAQGTVVADSNGDWSYDFAASEIPEGTGDLDISATIQDSAGNTASDTDTVAYDT EVTNYTSADQNDTVGVNLQQMQQGFTLQGTVEEGSSVSVEINGTTHDAVVDSSGNWSLTVDGDDIGSFSQGGLVATVTAT DPAGNVDTLMQPIDIDTLYETPEFAGTTTIAGQIQSIFLDESDDALTMYSLDSSGNATQLDATETSSGISGVDKLDLDTP ISDGANLIVQSTDDAGNKSSTLVIDQENPTSSLLSGLDGFNIDAIDLVFEDGTDGANLVLTEALIKEMSDNSDTLTIRAD ELANVTHEVTLTGATEITSTVSGYSAYSIGDATVLIEEDAGISLNGTPVI >Mature_849_residues STVAYITRNASGTNQHGTSAEGSPSVIPTNGATDISLNLDPSDVQSYARRGRDLHITLFDGTVVELEGFYDPVATGSKNL FLSDGGDFIEVVLEDKADGMLFASYEPIDISGKWSAYDDMVFLDVDRIEPVVAPLAAPLLGGLGGLGAAAAGAAVLVGGG GGGGGDGDGAIVPTVDDADGTYDVPEGDPDGVTITGTGEAGSTVEVDIGGVTGTTTVGEDGTWSVDFPTSDLPGDGVYET VVDVVAPDGTTYDDLDGPTIDIDTEAPTVIVTEGTKSVNDIVNGDEQESGTIISGTGEAGATVTLVIEGHSQTTTVDENG NWTVTFSSDEIDTGEYETDIEITTTDPHGNSTVSSDVLVVDTETTVAIDTGLAGGDDLINAAEAAAAAGVAITGTAEAGA AVEVVVEGVTRTTTADSNGTWSVIYEAGTLPSGTYDADISVTSTDTAGNSATADSTIAVDTEAGFVQLSDDPIETDDVIN EDERADGVTITGTATPGETVTVQLGTAQGTVVADSNGDWSYDFAASEIPEGTGDLDISATIQDSAGNTASDTDTVAYDTE VTNYTSADQNDTVGVNLQQMQQGFTLQGTVEEGSSVSVEINGTTHDAVVDSSGNWSLTVDGDDIGSFSQGGLVATVTATD PAGNVDTLMQPIDIDTLYETPEFAGTTTIAGQIQSIFLDESDDALTMYSLDSSGNATQLDATETSSGISGVDKLDLDTPI SDGANLIVQSTDDAGNKSSTLVIDQENPTSSLLSGLDGFNIDAIDLVFEDGTDGANLVLTEALIKEMSDNSDTLTIRADE LANVTHEVTLTGATEITSTVSGYSAYSIGDATVLIEEDAGISLNGTPVI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86474; Mature: 86343
Theoretical pI: Translated: 3.18; Mature: 3.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVAYITRNASGTNQHGTSAEGSPSVIPTNGATDISLNLDPSDVQSYARRGRDLHITLF CCEEEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHCCCEEEEEEE DGTVVELEGFYDPVATGSKNLFLSDGGDFIEVVLEDKADGMLFASYEPIDISGKWSAYDD CCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEECCCEECCCCCCCCCC MVFLDVDRIEPVVAPLAAPLLGGLGGLGAAAAGAAVLVGGGGGGGGDGDGAIVPTVDDAD EEEEEHHHCCHHHHHHHHHHHHCCCCCCHHCCCCEEEEECCCCCCCCCCCEEEEEECCCC GTYDVPEGDPDGVTITGTGEAGSTVEVDIGGVTGTTTVGEDGTWSVDFPTSDLPGDGVYE CCEECCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHH TVVDVVAPDGTTYDDLDGPTIDIDTEAPTVIVTEGTKSVNDIVNGDEQESGTIISGTGEA HHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHCCCCCCCCCEEEEECCCC GATVTLVIEGHSQTTTVDENGNWTVTFSSDEIDTGEYETDIEITTTDPHGNSTVSSDVLV CCEEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEE VDTETTVAIDTGLAGGDDLINAAEAAAAAGVAITGTAEAGAAVEVVVEGVTRTTTADSNG EECCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCEEEEECCCCC TWSVIYEAGTLPSGTYDADISVTSTDTAGNSATADSTIAVDTEAGFVQLSDDPIETDDVI EEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCC NEDERADGVTITGTATPGETVTVQLGTAQGTVVADSNGDWSYDFAASEIPEGTGDLDISA CCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEECCCCCEEEECCHHHCCCCCCCEEEEE TIQDSAGNTASDTDTVAYDTEVTNYTSADQNDTVGVNLQQMQQGFTLQGTVEEGSSVSVE EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCEECCCHHHHHCCCEEEEEECCCCEEEEE INGTTHDAVVDSSGNWSLTVDGDDIGSFSQGGLVATVTATDPAGNVDTLMQPIDIDTLYE ECCCCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCHHHCC TPEFAGTTTIAGQIQSIFLDESDDALTMYSLDSSGNATQLDATETSSGISGVDKLDLDTP CCCCCCCEEEECEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC ISDGANLIVQSTDDAGNKSSTLVIDQENPTSSLLSGLDGFNIDAIDLVFEDGTDGANLVL CCCCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEE TEALIKEMSDNSDTLTIRADELANVTHEVTLTGATEITSTVSGYSAYSIGDATVLIEEDA HHHHHHHHCCCCCEEEEEEHHHCCCEEEEEEECCHHHHHHHCCCEEEEECCEEEEEECCC GISLNGTPVI CEECCCCCCC >Mature Secondary Structure STVAYITRNASGTNQHGTSAEGSPSVIPTNGATDISLNLDPSDVQSYARRGRDLHITLF CEEEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHCCCEEEEEEE DGTVVELEGFYDPVATGSKNLFLSDGGDFIEVVLEDKADGMLFASYEPIDISGKWSAYDD CCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEECCCEECCCCCCCCCC MVFLDVDRIEPVVAPLAAPLLGGLGGLGAAAAGAAVLVGGGGGGGGDGDGAIVPTVDDAD EEEEEHHHCCHHHHHHHHHHHHCCCCCCHHCCCCEEEEECCCCCCCCCCCEEEEEECCCC GTYDVPEGDPDGVTITGTGEAGSTVEVDIGGVTGTTTVGEDGTWSVDFPTSDLPGDGVYE CCEECCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHH TVVDVVAPDGTTYDDLDGPTIDIDTEAPTVIVTEGTKSVNDIVNGDEQESGTIISGTGEA HHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHCCCCCCCCCEEEEECCCC GATVTLVIEGHSQTTTVDENGNWTVTFSSDEIDTGEYETDIEITTTDPHGNSTVSSDVLV CCEEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEE VDTETTVAIDTGLAGGDDLINAAEAAAAAGVAITGTAEAGAAVEVVVEGVTRTTTADSNG EECCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCEEEEECCCCC TWSVIYEAGTLPSGTYDADISVTSTDTAGNSATADSTIAVDTEAGFVQLSDDPIETDDVI EEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCC NEDERADGVTITGTATPGETVTVQLGTAQGTVVADSNGDWSYDFAASEIPEGTGDLDISA CCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEECCCCCEEEECCHHHCCCCCCCEEEEE TIQDSAGNTASDTDTVAYDTEVTNYTSADQNDTVGVNLQQMQQGFTLQGTVEEGSSVSVE EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCEECCCHHHHHCCCEEEEEECCCCEEEEE INGTTHDAVVDSSGNWSLTVDGDDIGSFSQGGLVATVTATDPAGNVDTLMQPIDIDTLYE ECCCCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCHHHCC TPEFAGTTTIAGQIQSIFLDESDDALTMYSLDSSGNATQLDATETSSGISGVDKLDLDTP CCCCCCCEEEECEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC ISDGANLIVQSTDDAGNKSSTLVIDQENPTSSLLSGLDGFNIDAIDLVFEDGTDGANLVL CCCCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEE TEALIKEMSDNSDTLTIRADELANVTHEVTLTGATEITSTVSGYSAYSIGDATVLIEEDA HHHHHHHHCCCCCEEEEEEHHHCCCEEEEEEECCHHHHHHHCCCEEEEECCEEEEEECCC GISLNGTPVI CEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA