Click here to switch to the map view.

The map label for this gene is ydgD [C]

Identifier: 99080368

GI number: 99080368

Start: 553735

End: 554442

Strand: Direct

Name: ydgD [C]

Synonym: TM1040_0527

Alternate gene names: 99080368

Gene position: 553735-554442 (Clockwise)

Preceding gene: 99080358

Following gene: 99080373

Centisome position: 17.3

GC content: 60.88

Gene sequence:

>708_bases
ATGAGACGAGTGCTTGCGATTATCGCGGCTTGCTTATCCTTAGGCCTTGCCGAAACAGCGACTGCTAAAGATGGACGTGC
CAGCAGCCTTCCGGGGTGGGAAGCGGTTGGTAGATTGAATATTGCTGGCAAGTATATGTGCACCGGCACGTTGATTGCAC
CAAATCTGGTACTAACGGCGGCGCATTGCGTGTATGACGCTCGCACCGGCCAGCGGGTGAACCCGCGCGGTATCCGTTTT
GAAGCGGGGCTTGATGGGCGCCGGGTCAAAGCGCAGCGTTCTGTGTCAAAAGCAGTGGTGCATCCGGCCTATGAATTCCG
CACCGGCGGAAACTCGCAGCTCGGTGCCGATCTTGCGGTTCTGCGTCTGTCTCAGCCGATCAACCGCTCTGACATCCGCC
CCTTTGCGATGTCGGCCTCCGCCAATCAGGGCGCCAGCGTGGATGTGCTCTCTTATAGCTATCACAACGCCACCCGCGCC
AGCCGCGAACAGGATTGTCAGGTGCTGTCGCGGCGGACCCGGACCCTCGTGATGTCGTGCAGAGTGGATTTTGGGGCCTC
GGGTGCTCCGGTTCTGGAAATCACGCCCGGCCAGCCGCCCAAGATCGTCTCGGTGATCTCGTCCAAGGCTGCCATGGGGC
GTCGCCCGGTCTCGATCGGAACGGCTCTGGACCGGACCCTGCGGGCGATGATGCAAAACGCGATCTGA

Upstream 100 bases:

>100_bases
CACAATCAATCCATGTTTTGGTCCAAGGCCTGCAAGGGCCAGCCATATTCCAGCCGCACGCCTGAACGAGTGTGGAGTTG
TGGGAACATGGAGTGGAAAC

Downstream 100 bases:

>100_bases
GGACCTTTTTATAGACCGCACGCGACATGTGGCCAAAACGGCAAACCGTCGCCGCGTAAGCATCCAGAGTTATCGACAGG
ATCCGGTGCCAGAATGGCAA

Product: peptidase S1 and S6, chymotrypsin/Hap

Products: NA

Alternate protein names: Trypsin Domain Protein; Trypsin Domain-Containing Protein; Trypsin; S1/S6 Family Peptidase

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MRRVLAIIAACLSLGLAETATAKDGRASSLPGWEAVGRLNIAGKYMCTGTLIAPNLVLTAAHCVYDARTGQRVNPRGIRF
EAGLDGRRVKAQRSVSKAVVHPAYEFRTGGNSQLGADLAVLRLSQPINRSDIRPFAMSASANQGASVDVLSYSYHNATRA
SREQDCQVLSRRTRTLVMSCRVDFGASGAPVLEITPGQPPKIVSVISSKAAMGRRPVSIGTALDRTLRAMMQNAI

Sequences:

>Translated_235_residues
MRRVLAIIAACLSLGLAETATAKDGRASSLPGWEAVGRLNIAGKYMCTGTLIAPNLVLTAAHCVYDARTGQRVNPRGIRF
EAGLDGRRVKAQRSVSKAVVHPAYEFRTGGNSQLGADLAVLRLSQPINRSDIRPFAMSASANQGASVDVLSYSYHNATRA
SREQDCQVLSRRTRTLVMSCRVDFGASGAPVLEITPGQPPKIVSVISSKAAMGRRPVSIGTALDRTLRAMMQNAI
>Mature_235_residues
MRRVLAIIAACLSLGLAETATAKDGRASSLPGWEAVGRLNIAGKYMCTGTLIAPNLVLTAAHCVYDARTGQRVNPRGIRF
EAGLDGRRVKAQRSVSKAVVHPAYEFRTGGNSQLGADLAVLRLSQPINRSDIRPFAMSASANQGASVDVLSYSYHNATRA
SREQDCQVLSRRTRTLVMSCRVDFGASGAPVLEITPGQPPKIVSVISSKAAMGRRPVSIGTALDRTLRAMMQNAI

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.21.- [C]

Molecular weight: Translated: 25079; Mature: 25079

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: PS00134 TRYPSIN_HIS ; PS50240 TRYPSIN_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVLAIIAACLSLGLAETATAKDGRASSLPGWEAVGRLNIAGKYMCTGTLIAPNLVLTA
CHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHCEEECCCEEEEECEEECCHHHHHH
AHCVYDARTGQRVNPRGIRFEAGLDGRRVKAQRSVSKAVVHPAYEFRTGGNSQLGADLAV
HHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHEE
LRLSQPINRSDIRPFAMSASANQGASVDVLSYSYHNATRASREQDCQVLSRRTRTLVMSC
EECCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCHHHHCHHHHHHHHHHHHHEEEEEE
RVDFGASGAPVLEITPGQPPKIVSVISSKAAMGRRPVSIGTALDRTLRAMMQNAI
EECCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRRVLAIIAACLSLGLAETATAKDGRASSLPGWEAVGRLNIAGKYMCTGTLIAPNLVLTA
CHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHCEEECCCEEEEECEEECCHHHHHH
AHCVYDARTGQRVNPRGIRFEAGLDGRRVKAQRSVSKAVVHPAYEFRTGGNSQLGADLAV
HHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHEE
LRLSQPINRSDIRPFAMSASANQGASVDVLSYSYHNATRASREQDCQVLSRRTRTLVMSC
EECCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCHHHHCHHHHHHHHHHHHHEEEEEE
RVDFGASGAPVLEITPGQPPKIVSVISSKAAMGRRPVSIGTALDRTLRAMMQNAI
EECCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA