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The map label for this gene is yhiR [H]

Identifier: 99080316

GI number: 99080316

Start: 494301

End: 495080

Strand: Direct

Name: yhiR [H]

Synonym: TM1040_0475

Alternate gene names: 99080316

Gene position: 494301-495080 (Clockwise)

Preceding gene: 99080309

Following gene: 99080319

Centisome position: 15.44

GC content: 60.38

Gene sequence:

>780_bases
ATGCTGTCGTATCAACATATCTATCACGCGGGAAATCTTGCGGATGTCCAGAAACACGCGCTTTTGGCGTGGATGCTGGA
CTACATGACCCAAAAGGACAAACCGCTGAGTTACCTGGAAACCCATGCGGGACGTGCGCTCTATGATCTTGGTTCTTCGG
AGGCGCTGAAAACAGGCGAGGCCGCGAAGGGGATCGATATTGCGCGCGACTGGTTTGCCCCGGAGCACCCATATGCGCGT
GTGCTGGAGCTGGTCCAGGCGCAGCATGGGGCGACCAGCTATCCGGGCTCGCCTCAGATCGCGGCAGAGCTGCTGCGCCC
TGGCGACAGGCTGCATCTGGCAGAACTTCACCCGCAGGAAGCAGCGGCGCTGCGTGAAGCCATGCGCGGGTCGGGCGCAA
AGGTTCATGTCCAGGATGGTTTTGAGATGGTGCAGTCGCTGGCACCGCCAGAGCCGCGCCGGGGGCTAGTGCTGATCGAT
CCGAGTTATGAAATCAAAGCCGACTACGCCCGTATTCCCGGTATCATCGCAAAACTGCACCGCAAATGGAATGTCGGCGT
GATCGCGCTGTGGTACCCGATCCTGAGCGACGGCACGCATGTCCCGATGCTGAAGGCGCTTGAGGCGCACGCATTGCCGG
AGGTTTTCCGCCATGAGGTGCGCTTTGCCCCGGCGCGCGACGGGCATCGGATGGTTGGCTCCGGGATGTTCGTGGTGAAT
GCACCCTTTGGGTTGTCACAGGAAGCCGTGCGTCTTGATGCGAAATTTGCGTCGCTCTGA

Upstream 100 bases:

>100_bases
GTGATTTCGCCACTCAATTTGCCGCAATGTGGTTGAGATTTGGTTTAGGGCGCGCGCGGAGCCTCTTTCGCAAACCCCGC
ATTACAGCTAAGGGACGCAT

Downstream 100 bases:

>100_bases
TTGAAGCTGGCGCGTTTGAAAAGGGAAACCGCCCGCACGGGGATGCGGACGGTTGGGTGTCAGGGGCGAGCGGGCTGTCT
TATGAGGCCCGGCGTTGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MLSYQHIYHAGNLADVQKHALLAWMLDYMTQKDKPLSYLETHAGRALYDLGSSEALKTGEAAKGIDIARDWFAPEHPYAR
VLELVQAQHGATSYPGSPQIAAELLRPGDRLHLAELHPQEAAALREAMRGSGAKVHVQDGFEMVQSLAPPEPRRGLVLID
PSYEIKADYARIPGIIAKLHRKWNVGVIALWYPILSDGTHVPMLKALEAHALPEVFRHEVRFAPARDGHRMVGSGMFVVN
APFGLSQEAVRLDAKFASL

Sequences:

>Translated_259_residues
MLSYQHIYHAGNLADVQKHALLAWMLDYMTQKDKPLSYLETHAGRALYDLGSSEALKTGEAAKGIDIARDWFAPEHPYAR
VLELVQAQHGATSYPGSPQIAAELLRPGDRLHLAELHPQEAAALREAMRGSGAKVHVQDGFEMVQSLAPPEPRRGLVLID
PSYEIKADYARIPGIIAKLHRKWNVGVIALWYPILSDGTHVPMLKALEAHALPEVFRHEVRFAPARDGHRMVGSGMFVVN
APFGLSQEAVRLDAKFASL
>Mature_259_residues
MLSYQHIYHAGNLADVQKHALLAWMLDYMTQKDKPLSYLETHAGRALYDLGSSEALKTGEAAKGIDIARDWFAPEHPYAR
VLELVQAQHGATSYPGSPQIAAELLRPGDRLHLAELHPQEAAALREAMRGSGAKVHVQDGFEMVQSLAPPEPRRGLVLID
PSYEIKADYARIPGIIAKLHRKWNVGVIALWYPILSDGTHVPMLKALEAHALPEVFRHEVRFAPARDGHRMVGSGMFVVN
APFGLSQEAVRLDAKFASL

Specific function: Unknown

COG id: COG2961

COG function: function code R; Protein involved in catabolism of external DNA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0441 [H]

Homologues:

Organism=Escherichia coli, GI1789914, Length=254, Percent_Identity=41.3385826771654, Blast_Score=183, Evalue=8e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR007473 [H]

Pfam domain/function: PF04378 DUF519 [H]

EC number: NA

Molecular weight: Translated: 28646; Mature: 28646

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSYQHIYHAGNLADVQKHALLAWMLDYMTQKDKPLSYLETHAGRALYDLGSSEALKTGE
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEECCCCCHHHHCCC
AAKGIDIARDWFAPEHPYARVLELVQAQHGATSYPGSPQIAAELLRPGDRLHLAELHPQE
CCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEHHHCCHHH
AAALREAMRGSGAKVHVQDGFEMVQSLAPPEPRRGLVLIDPSYEIKADYARIPGIIAKLH
HHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
RKWNVGVIALWYPILSDGTHVPMLKALEAHALPEVFRHEVRFAPARDGHRMVGSGMFVVN
HCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEE
APFGLSQEAVRLDAKFASL
CCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MLSYQHIYHAGNLADVQKHALLAWMLDYMTQKDKPLSYLETHAGRALYDLGSSEALKTGE
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEECCCCCHHHHCCC
AAKGIDIARDWFAPEHPYARVLELVQAQHGATSYPGSPQIAAELLRPGDRLHLAELHPQE
CCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEHHHCCHHH
AAALREAMRGSGAKVHVQDGFEMVQSLAPPEPRRGLVLIDPSYEIKADYARIPGIIAKLH
HHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
RKWNVGVIALWYPILSDGTHVPMLKALEAHALPEVFRHEVRFAPARDGHRMVGSGMFVVN
HCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEE
APFGLSQEAVRLDAKFASL
CCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]