| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080315
Identifier: 99080315
GI number: 99080315
Start: 493430
End: 494182
Strand: Reverse
Name: 99080315
Synonym: TM1040_0474
Alternate gene names: NA
Gene position: 494182-493430 (Counterclockwise)
Preceding gene: 99080317
Following gene: 99080314
Centisome position: 15.44
GC content: 60.42
Gene sequence:
>753_bases ATGTCCCTCAGAACGAGCCTCAAGCCCGGCGTCGCGATTGCGCTGGCGCTTATCTTCTCCCTCCCACACAGCGCGCTGCA CGCAAATTCCGCGGGGTTTTCTCTGGTGGGGGATGGGGGCTTCTTCATGCGCACCTCTACCCCGTCGGCGCGCGAGGCGA TCCTGAATGACGATGCCACGGGGCGTGGCGCAGTTTCGATGAACCCGAGCGCCGCAAGCCTTTTTCGCGGGCGCAGCAGC GGAAGTCTATTTGCACGCGCTGCCGTTGCGGTTGGTGTCGATGTAGCAGAGATCATGAACGTGATCGCCAGCGCCGAGGC CGGGCGGGCCAACTATGACGCGGTCCAGCATGGCGCCAAGATCAAGCCACCTGCAAAACCCACCGACATGACGCTGCTGG AAATCTATACCTGGATCGACGCAACACCGGGGCAGCCGCATGCGATCGGCCGGTATCAGTTCATTCCTGCCACCCTGCGC CGCCTGGTGAAACACCAGGGCGTGCCTTTGGGGCGCAAGTTCAACAAGTCCTTGCAGGACCAACTGGCGCATCAGCTGAT TGAAGAAGCGGGCCTGTCGCAGTTCAAGGCTGGCGAAATCAGCCAGACCAAGTTCATGAACAACCTCGCCAAGATCTGGG CCGGGCTACCGACCTCGAACGGAAAATCCTATTATCACAACTACGCAGGAAACCGCGCCACGGTCACATGGGATACCTAC AAGGCGCGCATGGATGCCATCTTTTCTGGCTGA
Upstream 100 bases:
>100_bases ATGCGGGGTTTGCGAAAGAGGCTCCGCGCGCGCCCTAAACCAAATCTCAACCACATTGCGGCAAATTGAGTGGCGAAATC ACCCGCAGAAGCAGGTCCAT
Downstream 100 bases:
>100_bases CGCGCTGACCTACGAGACGGGCCTGTTGTGCGGGAATTGCGCAGAGGGGACAGATTGGCCCTGTTTACAGGCGAAAAGAC GCTAGGTGCTCCCAATACTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MSLRTSLKPGVAIALALIFSLPHSALHANSAGFSLVGDGGFFMRTSTPSAREAILNDDATGRGAVSMNPSAASLFRGRSS GSLFARAAVAVGVDVAEIMNVIASAEAGRANYDAVQHGAKIKPPAKPTDMTLLEIYTWIDATPGQPHAIGRYQFIPATLR RLVKHQGVPLGRKFNKSLQDQLAHQLIEEAGLSQFKAGEISQTKFMNNLAKIWAGLPTSNGKSYYHNYAGNRATVTWDTY KARMDAIFSG
Sequences:
>Translated_250_residues MSLRTSLKPGVAIALALIFSLPHSALHANSAGFSLVGDGGFFMRTSTPSAREAILNDDATGRGAVSMNPSAASLFRGRSS GSLFARAAVAVGVDVAEIMNVIASAEAGRANYDAVQHGAKIKPPAKPTDMTLLEIYTWIDATPGQPHAIGRYQFIPATLR RLVKHQGVPLGRKFNKSLQDQLAHQLIEEAGLSQFKAGEISQTKFMNNLAKIWAGLPTSNGKSYYHNYAGNRATVTWDTY KARMDAIFSG >Mature_249_residues SLRTSLKPGVAIALALIFSLPHSALHANSAGFSLVGDGGFFMRTSTPSAREAILNDDATGRGAVSMNPSAASLFRGRSSG SLFARAAVAVGVDVAEIMNVIASAEAGRANYDAVQHGAKIKPPAKPTDMTLLEIYTWIDATPGQPHAIGRYQFIPATLRR LVKHQGVPLGRKFNKSLQDQLAHQLIEEAGLSQFKAGEISQTKFMNNLAKIWAGLPTSNGKSYYHNYAGNRATVTWDTYK ARMDAIFSG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26778; Mature: 26647
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRTSLKPGVAIALALIFSLPHSALHANSAGFSLVGDGGFFMRTSTPSAREAILNDDAT CCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCEEEEECCCHHHHHHHCCCCC GRGAVSMNPSAASLFRGRSSGSLFARAAVAVGVDVAEIMNVIASAEAGRANYDAVQHGAK CCCEEEECCCHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHCCCC IKPPAKPTDMTLLEIYTWIDATPGQPHAIGRYQFIPATLRRLVKHQGVPLGRKFNKSLQD CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCHHHHHHHHH QLAHQLIEEAGLSQFKAGEISQTKFMNNLAKIWAGLPTSNGKSYYHNYAGNRATVTWDTY HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEEEHHH KARMDAIFSG HHHHHHHCCC >Mature Secondary Structure SLRTSLKPGVAIALALIFSLPHSALHANSAGFSLVGDGGFFMRTSTPSAREAILNDDAT CCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCEEEEECCCHHHHHHHCCCCC GRGAVSMNPSAASLFRGRSSGSLFARAAVAVGVDVAEIMNVIASAEAGRANYDAVQHGAK CCCEEEECCCHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHCCCC IKPPAKPTDMTLLEIYTWIDATPGQPHAIGRYQFIPATLRRLVKHQGVPLGRKFNKSLQD CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCHHHHHHHHH QLAHQLIEEAGLSQFKAGEISQTKFMNNLAKIWAGLPTSNGKSYYHNYAGNRATVTWDTY HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEEEHHH KARMDAIFSG HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA