| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is dut [H]
Identifier: 99080302
GI number: 99080302
Start: 479863
End: 480354
Strand: Direct
Name: dut [H]
Synonym: TM1040_0461
Alternate gene names: 99080302
Gene position: 479863-480354 (Clockwise)
Preceding gene: 99080301
Following gene: 99080303
Centisome position: 14.99
GC content: 61.99
Gene sequence:
>492_bases ATGACTGCATCGCAATTTGCGGTAGACGTGAAAATCATTGACCCGCGTATCCGGGATTGGGGGATGCCCAGCTACCAGAC CCAAGGCTCTGCCGCGATTGACCTTTTTGCCTGTATCGACGCGCCCAAAGAGATCGCGCCGCAGGCGCCTGCAGTGCTGA TCCCCTCGGGGCTGGCGTTTTACATGGGCGATCAGTCCTGCGCCGCGCTTGTGATGCCGCGGTCCGGGCTTGGTCACAAA AAAGGGCTGGTGATGGGTAATAATGTCGGCCTCATCGATGCCGACTATACTGGCGAAGTGTTCATCAGCGCCTGGAACCG CAACCCGCCGGGGGCCGCGCCGATCGTGATCGAGCCGGGGGAACGCATCGCGCAACTCATGTTTGTGCCAGTTCTGCGGG CGACCTTGAACGAGGTCGAGACATTCTCAAACAGCACGGAGCGTGGTGCGGGCGGCTTCGGCTCGACCGGCTCGGGGGCG ACCGGCGCATGA
Upstream 100 bases:
>100_bases CGAAAACCCAGTGGTGTTTCCTACCCGATTTGCGGCATAAACGTCGCGAATTGGACGGCGCGGAACAGGACACGCGCGCA GAGACAGAAGGATCGCCCCG
Downstream 100 bases:
>100_bases TTTTGGTACTGGGGCTTGCGGGGCTGATCTGGTGGGGCGGGCGGCTCTTTGGGGCATCGCAGTCGATGCGCTGGGCGTTG CTTGGTCTTTTGTTCCTGGC
Product: deoxyuridine 5'-triphosphate nucleotidohydrolase
Products: NA
Alternate protein names: dUTPase; dUTP pyrophosphatase [H]
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MTASQFAVDVKIIDPRIRDWGMPSYQTQGSAAIDLFACIDAPKEIAPQAPAVLIPSGLAFYMGDQSCAALVMPRSGLGHK KGLVMGNNVGLIDADYTGEVFISAWNRNPPGAAPIVIEPGERIAQLMFVPVLRATLNEVETFSNSTERGAGGFGSTGSGA TGA
Sequences:
>Translated_163_residues MTASQFAVDVKIIDPRIRDWGMPSYQTQGSAAIDLFACIDAPKEIAPQAPAVLIPSGLAFYMGDQSCAALVMPRSGLGHK KGLVMGNNVGLIDADYTGEVFISAWNRNPPGAAPIVIEPGERIAQLMFVPVLRATLNEVETFSNSTERGAGGFGSTGSGA TGA >Mature_162_residues TASQFAVDVKIIDPRIRDWGMPSYQTQGSAAIDLFACIDAPKEIAPQAPAVLIPSGLAFYMGDQSCAALVMPRSGLGHKK GLVMGNNVGLIDADYTGEVFISAWNRNPPGAAPIVIEPGERIAQLMFVPVLRATLNEVETFSNSTERGAGGFGSTGSGAT GA
Specific function: This enzyme is involved in nucleotide metabolism:it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA [H]
COG id: COG0756
COG function: function code F; dUTPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dUTPase family [H]
Homologues:
Organism=Escherichia coli, GI1790071, Length=151, Percent_Identity=52.9801324503311, Blast_Score=164, Evalue=3e-42, Organism=Caenorhabditis elegans, GI71988561, Length=144, Percent_Identity=35.4166666666667, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008180 - InterPro: IPR008181 [H]
Pfam domain/function: PF00692 dUTPase [H]
EC number: =3.6.1.23 [H]
Molecular weight: Translated: 17014; Mature: 16882
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASQFAVDVKIIDPRIRDWGMPSYQTQGSAAIDLFACIDAPKEIAPQAPAVLIPSGLAF CCCCCEEEEEEEECCCCHHCCCCCCCCCCCCEEEEEEECCCCHHHCCCCCEEEECCCEEE YMGDQSCAALVMPRSGLGHKKGLVMGNNVGLIDADYTGEVFISAWNRNPPGAAPIVIEPG EECCCCCEEEEECCCCCCCCCCEEECCCCEEEECCCCCEEEEEEECCCCCCCCCEEECCH ERIAQLMFVPVLRATLNEVETFSNSTERGAGGFGSTGSGATGA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TASQFAVDVKIIDPRIRDWGMPSYQTQGSAAIDLFACIDAPKEIAPQAPAVLIPSGLAF CCCCEEEEEEEECCCCHHCCCCCCCCCCCCEEEEEEECCCCHHHCCCCCEEEECCCEEE YMGDQSCAALVMPRSGLGHKKGLVMGNNVGLIDADYTGEVFISAWNRNPPGAAPIVIEPG EECCCCCEEEEECCCCCCCCCCEEECCCCEEEECCCCCEEEEEEECCCCCCCCCEEECCH ERIAQLMFVPVLRATLNEVETFSNSTERGAGGFGSTGSGATGA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA