| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080298
Identifier: 99080298
GI number: 99080298
Start: 474209
End: 475072
Strand: Direct
Name: 99080298
Synonym: TM1040_0457
Alternate gene names: NA
Gene position: 474209-475072 (Clockwise)
Preceding gene: 99080297
Following gene: 99080299
Centisome position: 14.81
GC content: 63.31
Gene sequence:
>864_bases ATGAGGAATATGCATTTTAGGCGCGGACCTGGAGGTCGGCAATTTCATCTGGCAGCAGTTCTTGCACTTTTGCCTTTTAT TACAAACGCCCAAGCGCTTGCGGAGACAAAGCTGGCGCATATCATCGAGGAAGCCAAGCAGGCCGATGTGGTCTTGCTTG GCGAGATCCACGACAACCCGGCGCATCACAAGGTCCAGTCCGAGGTGATAGCTGAAATTGCGCCTGTGGCGGTGGTCTGG GAGATGCTCACCGAGGATCAGGCGGCGCGACTTACGCCGGATGCGCTATCGGACCCGGCAGGGTTGGGCGAGGTGCTCGA CTGGGGCGAAAGCGGTTGGCCCGCGTTTGCTATGTATCAGCCTCTGTTTGAGGCGGCCCCGGAGGCGCAGCATTGGGGCG CGGCGGTCCCGCGGTCGGTGGCGCGAGACGCCGTTGCCAAGGGGGCGGTCGCGTTTTTCGGGGTAGAGGATGCGGCCCGC TTTGGGCTGGATCTGGCACTGTCTCAAGAGGAACAAGCTGCGCGCGAGGCCGAGCAGCAAGCGGCGCATTGCAATGCATT GCCCTATGATCTTCTCCCTGGAATGGTGGAGGTGCAGCGGCTCCGGGACGCGACGCTGGCTCGTGTGGCGCTTCTTGCGC GCGAGGCCGCACCTGCGGGCGCTGAAGGGCCCGTCGTCATTGTGACGGGCAACGGACACGCGCGGCTCGATCGTGGAGCG CCGGTGTATCTGCGCTACGCGGCACCCGACCTTGATCTCTTGTCTCTGGGGCAAGCCGAGGATGGGCAGATCCGAGGCGA GTTTGATCTCGTCCGGAATGCGGCGCCCATCGCACGCCCTGATCCCTGCGCGGCCTTTTACTGA
Upstream 100 bases:
>100_bases GACTGTCAAAAGAGCGCGTGCGTCAGCTGGAAGCCGCCGCCTTCTCAAAGATGAGAAAGAGCCTTGAAGGTCAGTCCCGT GAGGTGCAGAACTTCCTTGC
Downstream 100 bases:
>100_bases GGCAAGGCAGCCCGCAAGATACACATGTAGCCTTGGCCTTTGCCCTCGTTTTCCCCTTTCACTAGGGGGGGGGAGGGCAT AAGTTTGCCGAGCAAAGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 287; Mature: 287
Protein sequence:
>287_residues MRNMHFRRGPGGRQFHLAAVLALLPFITNAQALAETKLAHIIEEAKQADVVLLGEIHDNPAHHKVQSEVIAEIAPVAVVW EMLTEDQAARLTPDALSDPAGLGEVLDWGESGWPAFAMYQPLFEAAPEAQHWGAAVPRSVARDAVAKGAVAFFGVEDAAR FGLDLALSQEEQAAREAEQQAAHCNALPYDLLPGMVEVQRLRDATLARVALLAREAAPAGAEGPVVIVTGNGHARLDRGA PVYLRYAAPDLDLLSLGQAEDGQIRGEFDLVRNAAPIARPDPCAAFY
Sequences:
>Translated_287_residues MRNMHFRRGPGGRQFHLAAVLALLPFITNAQALAETKLAHIIEEAKQADVVLLGEIHDNPAHHKVQSEVIAEIAPVAVVW EMLTEDQAARLTPDALSDPAGLGEVLDWGESGWPAFAMYQPLFEAAPEAQHWGAAVPRSVARDAVAKGAVAFFGVEDAAR FGLDLALSQEEQAAREAEQQAAHCNALPYDLLPGMVEVQRLRDATLARVALLAREAAPAGAEGPVVIVTGNGHARLDRGA PVYLRYAAPDLDLLSLGQAEDGQIRGEFDLVRNAAPIARPDPCAAFY >Mature_287_residues MRNMHFRRGPGGRQFHLAAVLALLPFITNAQALAETKLAHIIEEAKQADVVLLGEIHDNPAHHKVQSEVIAEIAPVAVVW EMLTEDQAARLTPDALSDPAGLGEVLDWGESGWPAFAMYQPLFEAAPEAQHWGAAVPRSVARDAVAKGAVAFFGVEDAAR FGLDLALSQEEQAAREAEQQAAHCNALPYDLLPGMVEVQRLRDATLARVALLAREAAPAGAEGPVVIVTGNGHARLDRGA PVYLRYAAPDLDLLSLGQAEDGQIRGEFDLVRNAAPIARPDPCAAFY
Specific function: Unknown
COG id: COG3016
COG function: function code S; Uncharacterized iron-regulated protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30763; Mature: 30763
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNMHFRRGPGGRQFHLAAVLALLPFITNAQALAETKLAHIIEEAKQADVVLLGEIHDNP CCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC AHHKVQSEVIAEIAPVAVVWEMLTEDQAARLTPDALSDPAGLGEVLDWGESGWPAFAMYQ HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCCCCHHHHHCCCCCCCHHHHHH PLFEAAPEAQHWGAAVPRSVARDAVAKGAVAFFGVEDAARFGLDLALSQEEQAAREAEQQ HHHHHCCCHHHCCCHHHHHHHHHHHHHCCEEEEECHHHHHHCCHHEECCHHHHHHHHHHH AAHCNALPYDLLPGMVEVQRLRDATLARVALLAREAAPAGAEGPVVIVTGNGHARLDRGA HHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCC PVYLRYAAPDLDLLSLGQAEDGQIRGEFDLVRNAAPIARPDPCAAFY CEEEEECCCCCCHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MRNMHFRRGPGGRQFHLAAVLALLPFITNAQALAETKLAHIIEEAKQADVVLLGEIHDNP CCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC AHHKVQSEVIAEIAPVAVVWEMLTEDQAARLTPDALSDPAGLGEVLDWGESGWPAFAMYQ HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCCCCHHHHHCCCCCCCHHHHHH PLFEAAPEAQHWGAAVPRSVARDAVAKGAVAFFGVEDAARFGLDLALSQEEQAAREAEQQ HHHHHCCCHHHCCCHHHHHHHHHHHHHCCEEEEECHHHHHHCCHHEECCHHHHHHHHHHH AAHCNALPYDLLPGMVEVQRLRDATLARVALLAREAAPAGAEGPVVIVTGNGHARLDRGA HHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCC PVYLRYAAPDLDLLSLGQAEDGQIRGEFDLVRNAAPIARPDPCAAFY CEEEEECCCCCCHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA