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The map label for this gene is ureD

Identifier: 99080229

GI number: 99080229

Start: 395726

End: 396619

Strand: Reverse

Name: ureD

Synonym: TM1040_0388

Alternate gene names: 99080229

Gene position: 396619-395726 (Counterclockwise)

Preceding gene: 99080231

Following gene: 99080228

Centisome position: 12.39

GC content: 64.88

Gene sequence:

>894_bases
ATGCCGCAGGCCGCAGATATCGCGACAGCGCCCCAACGCCCAAGCGCCCCTGGGGATGTTGTGGCAGCTGGTCAGCCGCC
GCGCGCTCGGGGGCGGGCCCATGTCAGCAGCAAACGGCGCGATGATGGCGCAGTAGCCCTCGATACGCTTCACCAATCCG
GGGCGCTGAAGCTTCTGTTCCCGACTGGTCGGCCAGATCTTGAGGCGGTGACTGTCAACACTGCAGGCGGCATCACGGGC
GGTGATGACTTCGCGCTGACGGCCAAGGCTGGCGCCCAAAGCCAGCTCACCCTGACAACACAAGCCGCCGAACGGGTCTA
TCGCGCACAGCCGCATCAGACCGGACAGATGACAACGCGGCTGAGCGTGGAGCCACAAGCGCGCCTTCGATGGGTGCCGC
AAGAGACAATCCTGTTTCAGCACAGCGCCTTCCGGCGCAGCCTTCATGTGGAACTCGCCGACGATGCGGAGCTCTTGCTG
GTCGAGCCGCTTGTCTTTGGCCGCGTCGCCATGGGCGAGCATCTCTCCGCGCTGCGCTTTCACGACCAGATCCAGATCCG
ACGCGCAGGGCGCATCCTCTTTCGCGATGCAATCCGGCTCGACGGGGATGCTATGGCTCAGCTCAAGCGCCCGGGCATTG
CCGGCGTTCTGTCTGGCCCCTGCACCGCCATGGTCACACTCGTTCTGGCAAGCCCCGGTGCCGAAGCCGCCTTGGCGTGG
CTGCGCACTCAGTTGCCTGCGGGCAAAGAGGCCTATGGCGGGGCGTCCCTCCTCGCGCCGAATCTGTTGCATATGCGGCT
TCTGGCGCGCGACAGTTTTGTCTTACGCCAGAGCCTCTTGCCCATTCTTGACAAGCTCACCGAGGGCAGCCTGCCCCGAT
GCTGGAGACTTTGA

Upstream 100 bases:

>100_bases
CACACCGCGCGGATAGCGCACTGCCGCAAGACCTCGCACTCTCAGCGAAATCCATCCCGCAACCCTCAAAGGCTCTGGTA
TAATGTTCAGGGAAGCTGCC

Downstream 100 bases:

>100_bases
GACCATGAAAGCGACAGGCGCATGAATCTGACACCGAGAGAAAAAGACAAGCTTCTGGTCGCGATGGCGGCCGAAGTCGC
CCGCAAGCGACTGGCGCGCG

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MPQAADIATAPQRPSAPGDVVAAGQPPRARGRAHVSSKRRDDGAVALDTLHQSGALKLLFPTGRPDLEAVTVNTAGGITG
GDDFALTAKAGAQSQLTLTTQAAERVYRAQPHQTGQMTTRLSVEPQARLRWVPQETILFQHSAFRRSLHVELADDAELLL
VEPLVFGRVAMGEHLSALRFHDQIQIRRAGRILFRDAIRLDGDAMAQLKRPGIAGVLSGPCTAMVTLVLASPGAEAALAW
LRTQLPAGKEAYGGASLLAPNLLHMRLLARDSFVLRQSLLPILDKLTEGSLPRCWRL

Sequences:

>Translated_297_residues
MPQAADIATAPQRPSAPGDVVAAGQPPRARGRAHVSSKRRDDGAVALDTLHQSGALKLLFPTGRPDLEAVTVNTAGGITG
GDDFALTAKAGAQSQLTLTTQAAERVYRAQPHQTGQMTTRLSVEPQARLRWVPQETILFQHSAFRRSLHVELADDAELLL
VEPLVFGRVAMGEHLSALRFHDQIQIRRAGRILFRDAIRLDGDAMAQLKRPGIAGVLSGPCTAMVTLVLASPGAEAALAW
LRTQLPAGKEAYGGASLLAPNLLHMRLLARDSFVLRQSLLPILDKLTEGSLPRCWRL
>Mature_296_residues
PQAADIATAPQRPSAPGDVVAAGQPPRARGRAHVSSKRRDDGAVALDTLHQSGALKLLFPTGRPDLEAVTVNTAGGITGG
DDFALTAKAGAQSQLTLTTQAAERVYRAQPHQTGQMTTRLSVEPQARLRWVPQETILFQHSAFRRSLHVELADDAELLLV
EPLVFGRVAMGEHLSALRFHDQIQIRRAGRILFRDAIRLDGDAMAQLKRPGIAGVLSGPCTAMVTLVLASPGAEAALAWL
RTQLPAGKEAYGGASLLAPNLLHMRLLARDSFVLRQSLLPILDKLTEGSLPRCWRL

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_SILST (Q1GJP5)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_612383.1
- STRING:   Q1GJP5
- GeneID:   4078621
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_0388
- NMPDR:   fig|292414.1.peg.2437
- eggNOG:   COG0829
- HOGENOM:   HBG711156
- OMA:   QETILFD
- ProtClustDB:   CLSK767306
- BioCyc:   SSP292414:TM1040_0388-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 31963; Mature: 31832

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQAADIATAPQRPSAPGDVVAAGQPPRARGRAHVSSKRRDDGAVALDTLHQSGALKLLF
CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCEEEEEHHCCCCEEEEE
PTGRPDLEAVTVNTAGGITGGDDFALTAKAGAQSQLTLTTQAAERVYRAQPHQTGQMTTR
CCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCEEEE
LSVEPQARLRWVPQETILFQHSAFRRSLHVELADDAELLLVEPLVFGRVAMGEHLSALRF
EECCCHHHEEECCHHHHEEHHHHHHHEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHH
HDQIQIRRAGRILFRDAIRLDGDAMAQLKRPGIAGVLSGPCTAMVTLVLASPGAEAALAW
HHHHHHHHHCHHHHHHHHHCCCHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCHHHHHHH
LRTQLPAGKEAYGGASLLAPNLLHMRLLARDSFVLRQSLLPILDKLTEGSLPRCWRL
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCC
>Mature Secondary Structure 
PQAADIATAPQRPSAPGDVVAAGQPPRARGRAHVSSKRRDDGAVALDTLHQSGALKLLF
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCEEEEEHHCCCCEEEEE
PTGRPDLEAVTVNTAGGITGGDDFALTAKAGAQSQLTLTTQAAERVYRAQPHQTGQMTTR
CCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCEEEE
LSVEPQARLRWVPQETILFQHSAFRRSLHVELADDAELLLVEPLVFGRVAMGEHLSALRF
EECCCHHHEEECCHHHHEEHHHHHHHEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHH
HDQIQIRRAGRILFRDAIRLDGDAMAQLKRPGIAGVLSGPCTAMVTLVLASPGAEAALAW
HHHHHHHHHCHHHHHHHHHCCCHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCHHHHHHH
LRTQLPAGKEAYGGASLLAPNLLHMRLLARDSFVLRQSLLPILDKLTEGSLPRCWRL
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA