| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is pucI [H]
Identifier: 99080179
GI number: 99080179
Start: 342242
End: 343732
Strand: Direct
Name: pucI [H]
Synonym: TM1040_0338
Alternate gene names: 99080179
Gene position: 342242-343732 (Clockwise)
Preceding gene: 99080178
Following gene: 99080180
Centisome position: 10.69
GC content: 60.23
Gene sequence:
>1491_bases ATGACTGACATAACAAGCGGTTATGCCGCCTCAGAGGGTGCCGCGCACGCGCAGCTGGACCGTGCGCGCCTGGACCCCGA ACTCTATAACGAGGATCAACTGCCCACCACCGCCGCCGAGCGCACATGGAATTGGCTGTCGATTTCGGCGCTTTGGGTCG GGATGGTGGTCTGTATCCCAACGTATCTTCTGGCGTCCTATCTGATTGGCGCGGGAATGAGCTGGGATCAGGCGGTTCTG ACCATTCTGGCGGCCAATGCCATCGTGCTCATCCCGATGGTGCTGGTGGGCCATGCCGGCACCAAATACGGCATCCCGTT TCCGGTGCTGTTGCGCGCGTCCTTTGGTCCCGTGGGGGCCAAGATCCCGGCTGTTGCCCGTGGGATCGTGGCCTGCGGCT GGTTTGGCATCCAGACATGGGTTGGCGGTTCTGCGATCTTTGTGATCGTCAACAAGCTCACCGGAGGCGCGCTCGCGGCG GAGGCGCTGCCGCTTCTGGGGATCAGCCTTGGCGAATTTGTCTGCTTCTTGGCGTTCTGGGGCCTGCATCTCTACTTCAT CAAGAACGGCACCGAGTCGATCCGCTGGCTTGAGACCTATGCCGCGCCGTTCCTGCTGGCGATGGGGCTTGCGCTCCTGG CATGGGCCTATTCTGCGGCGGGCGGATTTGGCGAGATGCTCTCCACCCCCAGCGCCTTTGATGTGGGCCAGCCCAAAGAG GGGCAGTTCTGGGCGGTGTTCTGGCCAAGCCTGACGGGTATGATTGGCTATTGGGCGACGCTTGCGCTCAATATTCCGGA TTTCACCCGTCACGCCCGCAGCCAGAAAGATCAGTTGGTGGGGCAGATGGTGGGTCTGCCGATCCCGATGGCGTTGTTTG CCTTTATCGCCTCTGCTGTGACCTCGGCCACGGTTGTGATCTTTGGTGAGGCGATCTGGGATCCGGTGCAGCTCTCTGAA CGCATGGGCGGCTCTGCGGTGATCATCGCGCTTTTTGCGCTGATCGTGGCGACGCTGACGACAAACCTTGCGGCCAATGT GGTGGCCCCGGCGCATGGGTTTGCCAATCTTGCGCCAAGCAAGATCAACCTTAAGCGTGGCGGCTATATCACGGCAGCCA TCGGGATCGCGATGTTCCCGTGGATTCTGGTGAACCACATCGTTGGGTGGCTGATTGCCTATTCCGCGCTTTTGGGGCCG ATCGCGGGCGTGATGCTGGCGGATTATTACCTCTTGCGCAAAACCCGGCTCGAGGTTGCGGATCTCTTTAAATCAAACGG CATCTATGCGGGGCACAATGGCACCAACTGGGCCGGTGTCCTGGCGCTGGTCATCGGCATTCTGCCAAATCTGCCGGGCT TTCTGGCCGGGGTGGGGCTTACGGATGGGACCTCGCCGTTCTTTGCGATGATCTATACCTACGCCTGGTTTGTGGGGCTC TTTGTTGCGGGCGCGGCCTATTTGCTGCTCTCCAAAATGGTTAACAAATAA
Upstream 100 bases:
>100_bases TCTTGCGTCTCACATTTTGTCCCCGCACGTCGGGTTTTTTTGGTTTGCGCCCTTTGAAAGAACACGCCACAAATCCGGCT GTAAGGGAGGAAAACTAGAA
Downstream 100 bases:
>100_bases CAACTGTTGCTCCGGGGGAAGACCCCGGAGCGCCTTGATTTTAGCGCCAACTATCCAGCGTCTAGCGACAAAAAGCACCC TCAACTCAAAATGTTGACAT
Product: NCS1 nucleoside transporter
Products: NA
Alternate protein names: Allantoin transport protein [H]
Number of amino acids: Translated: 496; Mature: 495
Protein sequence:
>496_residues MTDITSGYAASEGAAHAQLDRARLDPELYNEDQLPTTAAERTWNWLSISALWVGMVVCIPTYLLASYLIGAGMSWDQAVL TILAANAIVLIPMVLVGHAGTKYGIPFPVLLRASFGPVGAKIPAVARGIVACGWFGIQTWVGGSAIFVIVNKLTGGALAA EALPLLGISLGEFVCFLAFWGLHLYFIKNGTESIRWLETYAAPFLLAMGLALLAWAYSAAGGFGEMLSTPSAFDVGQPKE GQFWAVFWPSLTGMIGYWATLALNIPDFTRHARSQKDQLVGQMVGLPIPMALFAFIASAVTSATVVIFGEAIWDPVQLSE RMGGSAVIIALFALIVATLTTNLAANVVAPAHGFANLAPSKINLKRGGYITAAIGIAMFPWILVNHIVGWLIAYSALLGP IAGVMLADYYLLRKTRLEVADLFKSNGIYAGHNGTNWAGVLALVIGILPNLPGFLAGVGLTDGTSPFFAMIYTYAWFVGL FVAGAAYLLLSKMVNK
Sequences:
>Translated_496_residues MTDITSGYAASEGAAHAQLDRARLDPELYNEDQLPTTAAERTWNWLSISALWVGMVVCIPTYLLASYLIGAGMSWDQAVL TILAANAIVLIPMVLVGHAGTKYGIPFPVLLRASFGPVGAKIPAVARGIVACGWFGIQTWVGGSAIFVIVNKLTGGALAA EALPLLGISLGEFVCFLAFWGLHLYFIKNGTESIRWLETYAAPFLLAMGLALLAWAYSAAGGFGEMLSTPSAFDVGQPKE GQFWAVFWPSLTGMIGYWATLALNIPDFTRHARSQKDQLVGQMVGLPIPMALFAFIASAVTSATVVIFGEAIWDPVQLSE RMGGSAVIIALFALIVATLTTNLAANVVAPAHGFANLAPSKINLKRGGYITAAIGIAMFPWILVNHIVGWLIAYSALLGP IAGVMLADYYLLRKTRLEVADLFKSNGIYAGHNGTNWAGVLALVIGILPNLPGFLAGVGLTDGTSPFFAMIYTYAWFVGL FVAGAAYLLLSKMVNK >Mature_495_residues TDITSGYAASEGAAHAQLDRARLDPELYNEDQLPTTAAERTWNWLSISALWVGMVVCIPTYLLASYLIGAGMSWDQAVLT ILAANAIVLIPMVLVGHAGTKYGIPFPVLLRASFGPVGAKIPAVARGIVACGWFGIQTWVGGSAIFVIVNKLTGGALAAE ALPLLGISLGEFVCFLAFWGLHLYFIKNGTESIRWLETYAAPFLLAMGLALLAWAYSAAGGFGEMLSTPSAFDVGQPKEG QFWAVFWPSLTGMIGYWATLALNIPDFTRHARSQKDQLVGQMVGLPIPMALFAFIASAVTSATVVIFGEAIWDPVQLSER MGGSAVIIALFALIVATLTTNLAANVVAPAHGFANLAPSKINLKRGGYITAAIGIAMFPWILVNHIVGWLIAYSALLGPI AGVMLADYYLLRKTRLEVADLFKSNGIYAGHNGTNWAGVLALVIGILPNLPGFLAGVGLTDGTSPFFAMIYTYAWFVGLF VAGAAYLLLSKMVNK
Specific function: Transport of allantoin [H]
COG id: COG1953
COG function: function code FH; Cytosine/uracil/thiamine/allantoin permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine-cytosine permease family [H]
Homologues:
Organism=Escherichia coli, GI87081749, Length=483, Percent_Identity=28.9855072463768, Blast_Score=181, Evalue=1e-46, Organism=Escherichia coli, GI1786530, Length=381, Percent_Identity=26.7716535433071, Blast_Score=66, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6322219, Length=497, Percent_Identity=28.5714285714286, Blast_Score=199, Evalue=1e-51, Organism=Saccharomyces cerevisiae, GI6319495, Length=472, Percent_Identity=28.1779661016949, Blast_Score=194, Evalue=2e-50, Organism=Saccharomyces cerevisiae, GI6319429, Length=511, Percent_Identity=28.1800391389432, Blast_Score=184, Evalue=3e-47, Organism=Saccharomyces cerevisiae, GI6323266, Length=456, Percent_Identity=24.780701754386, Blast_Score=119, Evalue=1e-27, Organism=Saccharomyces cerevisiae, GI6324645, Length=445, Percent_Identity=23.8202247191011, Blast_Score=116, Evalue=1e-26, Organism=Saccharomyces cerevisiae, GI6324766, Length=456, Percent_Identity=22.5877192982456, Blast_Score=108, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001248 - InterPro: IPR012681 [H]
Pfam domain/function: PF02133 Transp_cyt_pur [H]
EC number: NA
Molecular weight: Translated: 52760; Mature: 52628
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDITSGYAASEGAAHAQLDRARLDPELYNEDQLPTTAAERTWNWLSISALWVGMVVCIP CCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHH TYLLASYLIGAGMSWDQAVLTILAANAIVLIPMVLVGHAGTKYGIPFPVLLRASFGPVGA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCC KIPAVARGIVACGWFGIQTWVGGSAIFVIVNKLTGGALAAEALPLLGISLGEFVCFLAFW CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH GLHLYFIKNGTESIRWLETYAAPFLLAMGLALLAWAYSAAGGFGEMLSTPSAFDVGQPKE HHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC GQFWAVFWPSLTGMIGYWATLALNIPDFTRHARSQKDQLVGQMVGLPIPMALFAFIASAV CCEEEEECCHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH TSATVVIFGEAIWDPVQLSERMGGSAVIIALFALIVATLTTNLAANVVAPAHGFANLAPS HHHEEEEEHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC KINLKRGGYITAAIGIAMFPWILVNHIVGWLIAYSALLGPIAGVMLADYYLLRKTRLEVA CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLFKSNGIYAGHNGTNWAGVLALVIGILPNLPGFLAGVGLTDGTSPFFAMIYTYAWFVGL HHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHH FVAGAAYLLLSKMVNK HHHHHHHHHHHHHHCC >Mature Secondary Structure TDITSGYAASEGAAHAQLDRARLDPELYNEDQLPTTAAERTWNWLSISALWVGMVVCIP CCCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHH TYLLASYLIGAGMSWDQAVLTILAANAIVLIPMVLVGHAGTKYGIPFPVLLRASFGPVGA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCC KIPAVARGIVACGWFGIQTWVGGSAIFVIVNKLTGGALAAEALPLLGISLGEFVCFLAFW CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH GLHLYFIKNGTESIRWLETYAAPFLLAMGLALLAWAYSAAGGFGEMLSTPSAFDVGQPKE HHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC GQFWAVFWPSLTGMIGYWATLALNIPDFTRHARSQKDQLVGQMVGLPIPMALFAFIASAV CCEEEEECCHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH TSATVVIFGEAIWDPVQLSERMGGSAVIIALFALIVATLTTNLAANVVAPAHGFANLAPS HHHEEEEEHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC KINLKRGGYITAAIGIAMFPWILVNHIVGWLIAYSALLGPIAGVMLADYYLLRKTRLEVA CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLFKSNGIYAGHNGTNWAGVLALVIGILPNLPGFLAGVGLTDGTSPFFAMIYTYAWFVGL HHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHH FVAGAAYLLLSKMVNK HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377; 11344136 [H]