| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080077
Identifier: 99080077
GI number: 99080077
Start: 256298
End: 257110
Strand: Direct
Name: 99080077
Synonym: TM1040_0236
Alternate gene names: NA
Gene position: 256298-257110 (Clockwise)
Preceding gene: 99080076
Following gene: 99080078
Centisome position: 8.01
GC content: 60.64
Gene sequence:
>813_bases ATGGCGGCGACATTCAAGATGGTGGGCGTGATCCGCTTTTCGCTGCTGACGCCTACGTTCAATGCGGACCGCTATCCCGA TCTGGAGGCGGCGGCCGCCGCGATTTTTGCGCCGGACCGCATGGCCCTGCGGCTGCATCTTTTTGAGACGCTCTGCCTGC CCTCGCTTGTGCGGCAGAGCGATGCGGCGTTTCACCTGGTGGTAGCAACCTCAGATCGTCTTCCTGCGGTGATCTTGCAG CACCTTCAGGCGCTTCTGGCGCCGCATGATCACATGCAACTGATCCAGTTTGCCCCCGAGAACCACTATCAAATCCTGAA AGAGGCCTACCGCGCAGTGCCACAGCAGGGGGAGAGCCACCGCATCCTGTTTCGTCTTGATGATGACGACGCGCTGGATC GTCACTATGTGGCGCGCTGCAAGCGTCTGGCGGCGGGACTGGTGCCATTGCAGACCGAAGCCGTCTCTCCCATCGCGCTT GCGTTCAATCGCGGCTATTATCTGATCCGCGAAGAGGGTCAGCCGCCAGTGGTGATGGACAGTTGTGAACGTGCGCCGCT CTCGGCGGGGACGGCGCTGGTGCAGCCGATCGCGGCGCGCGGAAATCCCTATCGTTACAATCACCGCAAGTTTGCGCAGC ACTACACGCTCTATTCCGATATTTCCGTTCCATCCTTTGTGCGCACCGTGCATGGCGACAACCATTCGACCCCGGCGATG ATGGGGCTCACGGCGCGACAGAGCGATGCGGAGATGGACGCCGATCTACAGCGCCATTTCGACCTCAGCCTGTCCGACCT TAAAGCGATTTGA
Upstream 100 bases:
>100_bases TGTTTCGCGCGCGGGGCCTTGCAGGTGTCGCGCCTAGGCTCTTGGCAAGCGCGCGGCGGCGTGATTTCTGTGAGGGAACC AATCTGGGGAGGCGGGCGCG
Downstream 100 bases:
>100_bases AATGACCACATCCCTCAGCCCGAACCAAAGAGGCGCGCTCTTGATGCTTGGGAGCATGGCGTTCTTCACCTTTAACGATA CACTGGTCAAACTGGTGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MAATFKMVGVIRFSLLTPTFNADRYPDLEAAAAAIFAPDRMALRLHLFETLCLPSLVRQSDAAFHLVVATSDRLPAVILQ HLQALLAPHDHMQLIQFAPENHYQILKEAYRAVPQQGESHRILFRLDDDDALDRHYVARCKRLAAGLVPLQTEAVSPIAL AFNRGYYLIREEGQPPVVMDSCERAPLSAGTALVQPIAARGNPYRYNHRKFAQHYTLYSDISVPSFVRTVHGDNHSTPAM MGLTARQSDAEMDADLQRHFDLSLSDLKAI
Sequences:
>Translated_270_residues MAATFKMVGVIRFSLLTPTFNADRYPDLEAAAAAIFAPDRMALRLHLFETLCLPSLVRQSDAAFHLVVATSDRLPAVILQ HLQALLAPHDHMQLIQFAPENHYQILKEAYRAVPQQGESHRILFRLDDDDALDRHYVARCKRLAAGLVPLQTEAVSPIAL AFNRGYYLIREEGQPPVVMDSCERAPLSAGTALVQPIAARGNPYRYNHRKFAQHYTLYSDISVPSFVRTVHGDNHSTPAM MGLTARQSDAEMDADLQRHFDLSLSDLKAI >Mature_269_residues AATFKMVGVIRFSLLTPTFNADRYPDLEAAAAAIFAPDRMALRLHLFETLCLPSLVRQSDAAFHLVVATSDRLPAVILQH LQALLAPHDHMQLIQFAPENHYQILKEAYRAVPQQGESHRILFRLDDDDALDRHYVARCKRLAAGLVPLQTEAVSPIALA FNRGYYLIREEGQPPVVMDSCERAPLSAGTALVQPIAARGNPYRYNHRKFAQHYTLYSDISVPSFVRTVHGDNHSTPAMM GLTARQSDAEMDADLQRHFDLSLSDLKAI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30213; Mature: 30082
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAATFKMVGVIRFSLLTPTFNADRYPDLEAAAAAIFAPDRMALRLHLFETLCLPSLVRQS CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC DAAFHLVVATSDRLPAVILQHLQALLAPHDHMQLIQFAPENHYQILKEAYRAVPQQGESH CCEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC RILFRLDDDDALDRHYVARCKRLAAGLVPLQTEAVSPIALAFNRGYYLIREEGQPPVVMD EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCEEEEECCCEEEEEECCCCCEEEC SCERAPLSAGTALVQPIAARGNPYRYNHRKFAQHYTLYSDISVPSFVRTVHGDNHSTPAM CCCCCCCCCCHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHH MGLTARQSDAEMDADLQRHFDLSLSDLKAI EEEECCCCCCCCCHHHHHHCCCCHHHHHCC >Mature Secondary Structure AATFKMVGVIRFSLLTPTFNADRYPDLEAAAAAIFAPDRMALRLHLFETLCLPSLVRQS CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC DAAFHLVVATSDRLPAVILQHLQALLAPHDHMQLIQFAPENHYQILKEAYRAVPQQGESH CCEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC RILFRLDDDDALDRHYVARCKRLAAGLVPLQTEAVSPIALAFNRGYYLIREEGQPPVVMD EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCEEEEECCCEEEEEECCCCCEEEC SCERAPLSAGTALVQPIAARGNPYRYNHRKFAQHYTLYSDISVPSFVRTVHGDNHSTPAM CCCCCCCCCCHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHH MGLTARQSDAEMDADLQRHFDLSLSDLKAI EEEECCCCCCCCCHHHHHHCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA