Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080058

Identifier: 99080058

GI number: 99080058

Start: 232430

End: 233146

Strand: Reverse

Name: 99080058

Synonym: TM1040_0217

Alternate gene names: NA

Gene position: 233146-232430 (Counterclockwise)

Preceding gene: 99080060

Following gene: 99080057

Centisome position: 7.28

GC content: 58.72

Gene sequence:

>717_bases
ATGCACAGTGGGCGCGCCGCCACAATCACCAAAATCTCTGCGCACAAGCTGGCCTGCCGTTCGCGCACCGGCTATTTCAT
GGGTATGCTGATCTTCACGCCGCAGGCTCTTGCATTTGTCGCGCTGCCCAAGACGGGAACCACCGCCATTGAAAAGGCGT
TGCGCCCCCATGCCGACATCGTGTTTCGCAAGTCTCAGAAACACACGTCTGCGCAGCGGTTTCACCGCCGGATCCGCCCC
TTTGTGCGCAGTACCTTTGGCATCGCGCTCGAGAGCTTTGCCGTGTTGAGGGATCCCGAAGACCAGATCCGCAGCTGGTA
CAAATACCGCTGCCGCGATGACATTCGCGACAAGCCCGAATTTGCAGGGCACCTGAGCTTTGATGCATATGTGGGGGCGG
TCCTCTCAGAAGATCCGCCCCCTTGCGCACAGATCGGCAGCCAATACCGCATGCTGAGCGGTCGTGGTGGGCGAATTCTG
GTGGATCATCTCTTTGCCTATGAGCGCTGGGATCAGCTTGAGACCTTCCTCGCCGACAGGTTTGGCCACAGAATCATCTT
TGAACCCCACAATGTTTCGCCCTTTGCCAAGGCGGAGCTCTCGCCTTCATTGCAGCGCAAACTTCGCGCTGCCCGCAGAG
CAGAGTTCGATTTGCACGCCCGCTTGATGGATACAGACGGGAAACTGCAGCCCCGACTGCGGAACATGGCGGATTAG

Upstream 100 bases:

>100_bases
CATAGGCCGCAAAGGCCCCGACACAGAACCCCATGACCACAAAGGCCCGCCCATGCACCGCACTGGTGCGCATATCCGTC
AGCATTTCCATAAGGCGACA

Downstream 100 bases:

>100_bases
GGCTTTCCAAAAAGGGGTTTTCCGTCTAACAGGGCGGCTTCACGCGGGGTGACAGCCTTGGAGGCACCCCCAATCATATA
TGGAGAATTAAGATGGCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MHSGRAATITKISAHKLACRSRTGYFMGMLIFTPQALAFVALPKTGTTAIEKALRPHADIVFRKSQKHTSAQRFHRRIRP
FVRSTFGIALESFAVLRDPEDQIRSWYKYRCRDDIRDKPEFAGHLSFDAYVGAVLSEDPPPCAQIGSQYRMLSGRGGRIL
VDHLFAYERWDQLETFLADRFGHRIIFEPHNVSPFAKAELSPSLQRKLRAARRAEFDLHARLMDTDGKLQPRLRNMAD

Sequences:

>Translated_238_residues
MHSGRAATITKISAHKLACRSRTGYFMGMLIFTPQALAFVALPKTGTTAIEKALRPHADIVFRKSQKHTSAQRFHRRIRP
FVRSTFGIALESFAVLRDPEDQIRSWYKYRCRDDIRDKPEFAGHLSFDAYVGAVLSEDPPPCAQIGSQYRMLSGRGGRIL
VDHLFAYERWDQLETFLADRFGHRIIFEPHNVSPFAKAELSPSLQRKLRAARRAEFDLHARLMDTDGKLQPRLRNMAD
>Mature_238_residues
MHSGRAATITKISAHKLACRSRTGYFMGMLIFTPQALAFVALPKTGTTAIEKALRPHADIVFRKSQKHTSAQRFHRRIRP
FVRSTFGIALESFAVLRDPEDQIRSWYKYRCRDDIRDKPEFAGHLSFDAYVGAVLSEDPPPCAQIGSQYRMLSGRGGRIL
VDHLFAYERWDQLETFLADRFGHRIIFEPHNVSPFAKAELSPSLQRKLRAARRAEFDLHARLMDTDGKLQPRLRNMAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27286; Mature: 27286

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSGRAATITKISAHKLACRSRTGYFMGMLIFTPQALAFVALPKTGTTAIEKALRPHADI
CCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHCCCHHEEEECCCCCHHHHHHHHCCCHHE
VFRKSQKHTSAQRFHRRIRPFVRSTFGIALESFAVLRDPEDQIRSWYKYRCRDDIRDKPE
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
FAGHLSFDAYVGAVLSEDPPPCAQIGSQYRMLSGRGGRILVDHLFAYERWDQLETFLADR
CCCCCCHHHHHHHHHCCCCCCHHHHCCHHEECCCCCCEEHHHHHHHHHHHHHHHHHHHHH
FGHRIIFEPHNVSPFAKAELSPSLQRKLRAARRAEFDLHARLMDTDGKLQPRLRNMAD
HCCEEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHEEEECCCCCCCHHHHCCCC
>Mature Secondary Structure
MHSGRAATITKISAHKLACRSRTGYFMGMLIFTPQALAFVALPKTGTTAIEKALRPHADI
CCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHCCCHHEEEECCCCCHHHHHHHHCCCHHE
VFRKSQKHTSAQRFHRRIRPFVRSTFGIALESFAVLRDPEDQIRSWYKYRCRDDIRDKPE
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
FAGHLSFDAYVGAVLSEDPPPCAQIGSQYRMLSGRGGRILVDHLFAYERWDQLETFLADR
CCCCCCHHHHHHHHHCCCCCCHHHHCCHHEECCCCCCEEHHHHHHHHHHHHHHHHHHHHH
FGHRIIFEPHNVSPFAKAELSPSLQRKLRAARRAEFDLHARLMDTDGKLQPRLRNMAD
HCCEEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHEEEECCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA