| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080058
Identifier: 99080058
GI number: 99080058
Start: 232430
End: 233146
Strand: Reverse
Name: 99080058
Synonym: TM1040_0217
Alternate gene names: NA
Gene position: 233146-232430 (Counterclockwise)
Preceding gene: 99080060
Following gene: 99080057
Centisome position: 7.28
GC content: 58.72
Gene sequence:
>717_bases ATGCACAGTGGGCGCGCCGCCACAATCACCAAAATCTCTGCGCACAAGCTGGCCTGCCGTTCGCGCACCGGCTATTTCAT GGGTATGCTGATCTTCACGCCGCAGGCTCTTGCATTTGTCGCGCTGCCCAAGACGGGAACCACCGCCATTGAAAAGGCGT TGCGCCCCCATGCCGACATCGTGTTTCGCAAGTCTCAGAAACACACGTCTGCGCAGCGGTTTCACCGCCGGATCCGCCCC TTTGTGCGCAGTACCTTTGGCATCGCGCTCGAGAGCTTTGCCGTGTTGAGGGATCCCGAAGACCAGATCCGCAGCTGGTA CAAATACCGCTGCCGCGATGACATTCGCGACAAGCCCGAATTTGCAGGGCACCTGAGCTTTGATGCATATGTGGGGGCGG TCCTCTCAGAAGATCCGCCCCCTTGCGCACAGATCGGCAGCCAATACCGCATGCTGAGCGGTCGTGGTGGGCGAATTCTG GTGGATCATCTCTTTGCCTATGAGCGCTGGGATCAGCTTGAGACCTTCCTCGCCGACAGGTTTGGCCACAGAATCATCTT TGAACCCCACAATGTTTCGCCCTTTGCCAAGGCGGAGCTCTCGCCTTCATTGCAGCGCAAACTTCGCGCTGCCCGCAGAG CAGAGTTCGATTTGCACGCCCGCTTGATGGATACAGACGGGAAACTGCAGCCCCGACTGCGGAACATGGCGGATTAG
Upstream 100 bases:
>100_bases CATAGGCCGCAAAGGCCCCGACACAGAACCCCATGACCACAAAGGCCCGCCCATGCACCGCACTGGTGCGCATATCCGTC AGCATTTCCATAAGGCGACA
Downstream 100 bases:
>100_bases GGCTTTCCAAAAAGGGGTTTTCCGTCTAACAGGGCGGCTTCACGCGGGGTGACAGCCTTGGAGGCACCCCCAATCATATA TGGAGAATTAAGATGGCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MHSGRAATITKISAHKLACRSRTGYFMGMLIFTPQALAFVALPKTGTTAIEKALRPHADIVFRKSQKHTSAQRFHRRIRP FVRSTFGIALESFAVLRDPEDQIRSWYKYRCRDDIRDKPEFAGHLSFDAYVGAVLSEDPPPCAQIGSQYRMLSGRGGRIL VDHLFAYERWDQLETFLADRFGHRIIFEPHNVSPFAKAELSPSLQRKLRAARRAEFDLHARLMDTDGKLQPRLRNMAD
Sequences:
>Translated_238_residues MHSGRAATITKISAHKLACRSRTGYFMGMLIFTPQALAFVALPKTGTTAIEKALRPHADIVFRKSQKHTSAQRFHRRIRP FVRSTFGIALESFAVLRDPEDQIRSWYKYRCRDDIRDKPEFAGHLSFDAYVGAVLSEDPPPCAQIGSQYRMLSGRGGRIL VDHLFAYERWDQLETFLADRFGHRIIFEPHNVSPFAKAELSPSLQRKLRAARRAEFDLHARLMDTDGKLQPRLRNMAD >Mature_238_residues MHSGRAATITKISAHKLACRSRTGYFMGMLIFTPQALAFVALPKTGTTAIEKALRPHADIVFRKSQKHTSAQRFHRRIRP FVRSTFGIALESFAVLRDPEDQIRSWYKYRCRDDIRDKPEFAGHLSFDAYVGAVLSEDPPPCAQIGSQYRMLSGRGGRIL VDHLFAYERWDQLETFLADRFGHRIIFEPHNVSPFAKAELSPSLQRKLRAARRAEFDLHARLMDTDGKLQPRLRNMAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27286; Mature: 27286
Theoretical pI: Translated: 10.69; Mature: 10.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSGRAATITKISAHKLACRSRTGYFMGMLIFTPQALAFVALPKTGTTAIEKALRPHADI CCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHCCCHHEEEECCCCCHHHHHHHHCCCHHE VFRKSQKHTSAQRFHRRIRPFVRSTFGIALESFAVLRDPEDQIRSWYKYRCRDDIRDKPE EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC FAGHLSFDAYVGAVLSEDPPPCAQIGSQYRMLSGRGGRILVDHLFAYERWDQLETFLADR CCCCCCHHHHHHHHHCCCCCCHHHHCCHHEECCCCCCEEHHHHHHHHHHHHHHHHHHHHH FGHRIIFEPHNVSPFAKAELSPSLQRKLRAARRAEFDLHARLMDTDGKLQPRLRNMAD HCCEEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHEEEECCCCCCCHHHHCCCC >Mature Secondary Structure MHSGRAATITKISAHKLACRSRTGYFMGMLIFTPQALAFVALPKTGTTAIEKALRPHADI CCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHCCCHHEEEECCCCCHHHHHHHHCCCHHE VFRKSQKHTSAQRFHRRIRPFVRSTFGIALESFAVLRDPEDQIRSWYKYRCRDDIRDKPE EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC FAGHLSFDAYVGAVLSEDPPPCAQIGSQYRMLSGRGGRILVDHLFAYERWDQLETFLADR CCCCCCHHHHHHHHHCCCCCCHHHHCCHHEECCCCCCEEHHHHHHHHHHHHHHHHHHHHH FGHRIIFEPHNVSPFAKAELSPSLQRKLRAARRAEFDLHARLMDTDGKLQPRLRNMAD HCCEEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHEEEECCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA