| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is ywbO [H]
Identifier: 99080051
GI number: 99080051
Start: 226926
End: 227567
Strand: Direct
Name: ywbO [H]
Synonym: TM1040_0210
Alternate gene names: 99080051
Gene position: 226926-227567 (Clockwise)
Preceding gene: 99080050
Following gene: 99080052
Centisome position: 7.09
GC content: 60.9
Gene sequence:
>642_bases ATGACCCTTCGTGTGGATATTGTGTCGGACGTGGTCTGTCCCTGGTGTGTGATCGGGTATCTCCAGCTGGCCAAGGCTGC GGCAGAAACCGGCACAGACCTTGAGGTGCATTGGCATCCGTTCGAGCTGAACCCGCAGATGGCCCCGGAAGGCGAAAACT TGCGGGAGCATCTGGCTGCCAAATATGGTACCACGCCGGAAGACTCGCGCGCGGCGCGGCTGAGGCTCACGGAGCTTGGC GCGGCGCTGGGGTTTGCGTTCGACTATGCGGACGACATGCGGATGGTGAACACCTTCCGGGCCCACCAGCTGATTGACTG GGCTGAGGATCAGGGCAAGGCGCATGAGATGAAGCGCGCGCTGTTTGCCGCGTTCTTCACCCGGCGCGAAGACCTCAATG ATGTATCGGTGCTTGCAGATGTCGCAGAGAGCCTTGGCCTTGATCGTGTGGCTGCAGTTGCCATGCTCGAGGGCGGCGAG AGGGCAGACGCCGTGCGCGAGAAACAGCAGTTCTGGACCTCCAAAGGCATAACGGGTGTTCCGGCAATGATCTTTGAACG TCAGTATCTGGTGACCGGCGCGCAAGGCGAGGAGACCTACGCTCGTATCCTGACGGAACTGTCAGAGACGACCCCAGCGT GA
Upstream 100 bases:
>100_bases GAGGCCCTGCAACTGCCCGAGCCGCGTCCTTCGGCGTTTGGCAAGGGCGACATCGCGGCGGCGGCCTCCGCCAATGCTGC CCGTTTCAAGGAGTAAAGCG
Downstream 100 bases:
>100_bases GCGCGCGGGTCTGACAGTAAATATGCAGGGGTGGTTCTCGTGTTCCGGGGGCTGCCCCTTTAGGCGAAATAGATCGGGAC AGACATGGGGTTTGCCAAGT
Product: DSBA oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MTLRVDIVSDVVCPWCVIGYLQLAKAAAETGTDLEVHWHPFELNPQMAPEGENLREHLAAKYGTTPEDSRAARLRLTELG AALGFAFDYADDMRMVNTFRAHQLIDWAEDQGKAHEMKRALFAAFFTRREDLNDVSVLADVAESLGLDRVAAVAMLEGGE RADAVREKQQFWTSKGITGVPAMIFERQYLVTGAQGEETYARILTELSETTPA
Sequences:
>Translated_213_residues MTLRVDIVSDVVCPWCVIGYLQLAKAAAETGTDLEVHWHPFELNPQMAPEGENLREHLAAKYGTTPEDSRAARLRLTELG AALGFAFDYADDMRMVNTFRAHQLIDWAEDQGKAHEMKRALFAAFFTRREDLNDVSVLADVAESLGLDRVAAVAMLEGGE RADAVREKQQFWTSKGITGVPAMIFERQYLVTGAQGEETYARILTELSETTPA >Mature_212_residues TLRVDIVSDVVCPWCVIGYLQLAKAAAETGTDLEVHWHPFELNPQMAPEGENLREHLAAKYGTTPEDSRAARLRLTELGA ALGFAFDYADDMRMVNTFRAHQLIDWAEDQGKAHEMKRALFAAFFTRREDLNDVSVLADVAESLGLDRVAAVAMLEGGER ADAVREKQQFWTSKGITGVPAMIFERQYLVTGAQGEETYARILTELSETTPA
Specific function: Unknown
COG id: COG2761
COG function: function code Q; Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001853 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF01323 DSBA [H]
EC number: NA
Molecular weight: Translated: 23693; Mature: 23562
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLRVDIVSDVVCPWCVIGYLQLAKAAAETGTDLEVHWHPFELNPQMAPEGENLREHLAA CEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEECCCCCCCCCHHHHHHHHH KYGTTPEDSRAARLRLTELGAALGFAFDYADDMRMVNTFRAHQLIDWAEDQGKAHEMKRA HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LFAAFFTRREDLNDVSVLADVAESLGLDRVAAVAMLEGGERADAVREKQQFWTSKGITGV HHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC PAMIFERQYLVTGAQGEETYARILTELSETTPA HHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure TLRVDIVSDVVCPWCVIGYLQLAKAAAETGTDLEVHWHPFELNPQMAPEGENLREHLAA EEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEECCCCCCCCCHHHHHHHHH KYGTTPEDSRAARLRLTELGAALGFAFDYADDMRMVNTFRAHQLIDWAEDQGKAHEMKRA HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LFAAFFTRREDLNDVSVLADVAESLGLDRVAAVAMLEGGERADAVREKQQFWTSKGITGV HHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC PAMIFERQYLVTGAQGEETYARILTELSETTPA HHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]