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The map label for this gene is ycfQ [H]

Identifier: 99080019

GI number: 99080019

Start: 198056

End: 198667

Strand: Reverse

Name: ycfQ [H]

Synonym: TM1040_0178

Alternate gene names: 99080019

Gene position: 198667-198056 (Counterclockwise)

Preceding gene: 99080020

Following gene: 99080018

Centisome position: 6.21

GC content: 65.85

Gene sequence:

>612_bases
ATGAGCAAGGCGGGGCAGGTACGGGGTCGGGGGCGTCCGCGCAAGTTCGACGAACAGGTGGTGCGCCAGACCATCCTGAG
CGTGTTCTGGGAGAAGGGCTATGCCGCTACATCGCTGGATGACCTCTCCAAGGCCACCGGCCTCGTCCGCCCCAGCCTCT
ATGCGGCCTTTGGTAACAAGGAAGAGATGTTCCTGCGCGCGATGGATGATTTTGTCATCCGCGTGCAGAGTGATCTGAAC
CGACAAGTGCCCCGCGACGCGACGCCCGAGGACGCGTTGCGGATCATCTACACCGCCATGCTGGAGATCTATAGCGGGGC
GCATGCGAAGGGCTGCCTGGTTTTCTCGACCGCTGTCGCAGAGGCCCCCGCGCACCCGGAGATTCGCGCCCGGCTGGCCC
AGCGCCTGGTGCAGACCGACGCGCAGTTTCGCCGCCTTTTTGACCACACCGCCCCGGGTGCATCAGAGACCGCAAGACAG
GCCGCCGCAGAGATGGCAGCGGCGGTTCTGCATTCGCTGGGCCTGCGGGTACGGGCAGGCGCCGAGCCGGATGAGGTGCG
GCGCTTTATTGAAACCGCGGCCCGTTCCATTGCCGCCGGGCTGGCCCCCTAA

Upstream 100 bases:

>100_bases
CGGCGATGCATAATTTTGGCGCCGACGTGGCCCATCGTCATGTGCCGGACTTTCACCCGCCGCATTTTTGCGATGTCCTG
CATGGGGCGGATTTCCCCGA

Downstream 100 bases:

>100_bases
GAGGCGCGAGACAATCCGGCGCAGGCAGTGTATGGGTGTTGACCCTGTCCCCTTCTTTGCCTTGAATATGCGCCATGGCC
AACGCCCCCCTCCCCTTTCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MSKAGQVRGRGRPRKFDEQVVRQTILSVFWEKGYAATSLDDLSKATGLVRPSLYAAFGNKEEMFLRAMDDFVIRVQSDLN
RQVPRDATPEDALRIIYTAMLEIYSGAHAKGCLVFSTAVAEAPAHPEIRARLAQRLVQTDAQFRRLFDHTAPGASETARQ
AAAEMAAAVLHSLGLRVRAGAEPDEVRRFIETAARSIAAGLAP

Sequences:

>Translated_203_residues
MSKAGQVRGRGRPRKFDEQVVRQTILSVFWEKGYAATSLDDLSKATGLVRPSLYAAFGNKEEMFLRAMDDFVIRVQSDLN
RQVPRDATPEDALRIIYTAMLEIYSGAHAKGCLVFSTAVAEAPAHPEIRARLAQRLVQTDAQFRRLFDHTAPGASETARQ
AAAEMAAAVLHSLGLRVRAGAEPDEVRRFIETAARSIAAGLAP
>Mature_202_residues
SKAGQVRGRGRPRKFDEQVVRQTILSVFWEKGYAATSLDDLSKATGLVRPSLYAAFGNKEEMFLRAMDDFVIRVQSDLNR
QVPRDATPEDALRIIYTAMLEIYSGAHAKGCLVFSTAVAEAPAHPEIRARLAQRLVQTDAQFRRLFDHTAPGASETARQA
AAEMAAAVLHSLGLRVRAGAEPDEVRRFIETAARSIAAGLAP

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=196, Percent_Identity=26.530612244898, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22253; Mature: 22121

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAGQVRGRGRPRKFDEQVVRQTILSVFWEKGYAATSLDDLSKATGLVRPSLYAAFGNK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCH
EEMFLRAMDDFVIRVQSDLNRQVPRDATPEDALRIIYTAMLEIYSGAHAKGCLVFSTAVA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
EAPAHPEIRARLAQRLVQTDAQFRRLFDHTAPGASETARQAAAEMAAAVLHSLGLRVRAG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEECC
AEPDEVRRFIETAARSIAAGLAP
CCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKAGQVRGRGRPRKFDEQVVRQTILSVFWEKGYAATSLDDLSKATGLVRPSLYAAFGNK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCH
EEMFLRAMDDFVIRVQSDLNRQVPRDATPEDALRIIYTAMLEIYSGAHAKGCLVFSTAVA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
EAPAHPEIRARLAQRLVQTDAQFRRLFDHTAPGASETARQAAAEMAAAVLHSLGLRVRAG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEECC
AEPDEVRRFIETAARSIAAGLAP
CCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]