| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080009
Identifier: 99080009
GI number: 99080009
Start: 184688
End: 185185
Strand: Reverse
Name: 99080009
Synonym: TM1040_0168
Alternate gene names: NA
Gene position: 185185-184688 (Counterclockwise)
Preceding gene: 99080010
Following gene: 99080007
Centisome position: 5.79
GC content: 63.45
Gene sequence:
>498_bases ATGTCCCGCTCATCCCTACGGCCCCTTGATCCGAGTGCGGAGGGCACGAGAATGACGGACCACACAGAGACGCGTGACGC GGGCACGCATGAGTTTGTATCAACAACATGTTTGCACCTCGGGCGCCCCTGCCCAGCGGCGCAGCGGATGCTGGCGGCGC TGGCAAAAGCGCTCGACAGCGCCCGCGGGCTTACGAAAGACGATTTCGAAATCAGTGGTGAAAGCCGCCTCGATGGCTGT GAGAAAGCCTGCCCGGCGCGATTTGCCGCAAGTCATGCCCGTATTCGGGTGTTTTGCGATGTGCAGGCCACGACCAAAAC AGAGACGCTGGACCGATTTGCGGATGCAATGTTGTCGGCAGACGGGGGCAGCGCGCATGGCACCTCCAGCGCAGACATGC CCCGCGCGTTTGGCGAAGCCCGCCCAGCGCGTCCGCCCGTGCAAGCGCCCTCAATTCGCCACCCGCAGGGGGCACAGAGA CCACGTCTGATGAGCTAA
Upstream 100 bases:
>100_bases GAGACCTGCCATCGGCAATGTAAACCTGAAGCCGGGCGGGGTGTCTCGGAGGAGGTCTGATGGCTGATCACTCCGCGCCC GAAGGGCCTGATCCCATCCG
Downstream 100 bases:
>100_bases GCTGCTCGGCCTATGCTGGCGGCGCTTGGCGACGGCGGCCATAGGCCCAGGCCATCTGCGCATCCGTTTCCACCGCACAG GGCCTCAGGGCCCTGAGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MSRSSLRPLDPSAEGTRMTDHTETRDAGTHEFVSTTCLHLGRPCPAAQRMLAALAKALDSARGLTKDDFEISGESRLDGC EKACPARFAASHARIRVFCDVQATTKTETLDRFADAMLSADGGSAHGTSSADMPRAFGEARPARPPVQAPSIRHPQGAQR PRLMS
Sequences:
>Translated_165_residues MSRSSLRPLDPSAEGTRMTDHTETRDAGTHEFVSTTCLHLGRPCPAAQRMLAALAKALDSARGLTKDDFEISGESRLDGC EKACPARFAASHARIRVFCDVQATTKTETLDRFADAMLSADGGSAHGTSSADMPRAFGEARPARPPVQAPSIRHPQGAQR PRLMS >Mature_164_residues SRSSLRPLDPSAEGTRMTDHTETRDAGTHEFVSTTCLHLGRPCPAAQRMLAALAKALDSARGLTKDDFEISGESRLDGCE KACPARFAASHARIRVFCDVQATTKTETLDRFADAMLSADGGSAHGTSSADMPRAFGEARPARPPVQAPSIRHPQGAQRP RLMS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17690; Mature: 17559
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSSLRPLDPSAEGTRMTDHTETRDAGTHEFVSTTCLHLGRPCPAAQRMLAALAKALDS CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ARGLTKDDFEISGESRLDGCEKACPARFAASHARIRVFCDVQATTKTETLDRFADAMLSA HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCC DGGSAHGTSSADMPRAFGEARPARPPVQAPSIRHPQGAQRPRLMS CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SRSSLRPLDPSAEGTRMTDHTETRDAGTHEFVSTTCLHLGRPCPAAQRMLAALAKALDS CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ARGLTKDDFEISGESRLDGCEKACPARFAASHARIRVFCDVQATTKTETLDRFADAMLSA HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCC DGGSAHGTSSADMPRAFGEARPARPPVQAPSIRHPQGAQRPRLMS CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA