Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99079983

Identifier: 99079983

GI number: 99079983

Start: 154810

End: 156234

Strand: Reverse

Name: 99079983

Synonym: TM1040_0142

Alternate gene names: NA

Gene position: 156234-154810 (Counterclockwise)

Preceding gene: 99079984

Following gene: 99079982

Centisome position: 4.88

GC content: 60.35

Gene sequence:

>1425_bases
ATGGCTGGCAAAACATTGAATAAAAACAACCTTGTAGCACTGGGAGCCGAGATGCTCGCGGATCTTCTGCTAGAGAGCGT
CAAAGGAGACGCAGCGCGGCAGAGGCGCGTGCGGATGGCCCTCGCCGCCAATCAAGGTCCCGAAACGGTTGCCGCCGATG
TGCGCAAACGCTTTGCCTCGATCCGGCGGGCGCGCAGTTTTATCTCGCGCAAGACACAAAAGACCCTCGCCAAGGAACTT
GCGAACCACACCCAACTGATCGAAGCCAGGATTGCACCGCACGCGCCGGACCTCGCGTTTGATCTTCTGTGGGCGCAGCT
ACACTTGGCGAATGATATCCTTGATCGCACCGACGATAGTCAGGGCGTGATTGCCAACGTCATGCAGGAGGCAATGGCGG
CAGTCACGCGTCTCTCGTCGTCGCTTACCCGTGACCCTGTTGCCTTGGCTGATGATATTTTCGAGGCTGTCTCAACAGAT
TCATACGGCGTGTTTGATACAACCGTAGAGGCGCTTGCAGAAGCTTTGGGAGGAAGTGGACTGGCGCGGTTGGAGACCCT
CGCCGAGCGCGCACGAGAAGCCCCTCTGTCGGACGCGGATCTCTTGTTGTTTGGTTATATCACCGATCCGCAACAGCGCG
AAGACCGCGCGCGCAACGCGCGCGACCGTGCCAGCGAGATGCTTTTGCTGGATATTGCTGACCTGAGAGGCGATGTGGAC
GCCTGGCTCTCGCATTATGCACCCGAGGAGCTCACGCAAGATGCGATTGCACCCGAAGCAAGCGCGCGATTGCTCGATGC
GGGGCGTGCGGAGGAAGCACTGGCTCTCATCGAACAGGCTTTGCCAAATGGTGATCTCTGGCACGACAAAGCGGATCTGG
ACGACGCGCATTTTGCCTGCCTTGAGGCGCTGGGGCGGCAGGAGGATCTGAGGTCTGCCCTTTGGGCCCGGTTCGAGAGA
CGGCTCTGCCCCCGCGCGTTGCGGCAATACCTGAAGCGCCTGCCCGATTTTGACGACATCGAAGCCGCAGAGCAGGCACG
TCAACATGTACTCACCTTTGCTCCCATCGAAGTCGCCCTGGGCTATTGCCTTGATGCCCCCGATCTCAGCTTGGCCTCAG
AACTGATCCTGGCACGCCATCCTGAGATCGATGGCGAGACCTTTACGTGCCTTGCGCCGCTTGCCGAAGCGCTTCGTGCG
GAGTTCCCCCTGCCGGCGGTGCTTCTGTGGCGCGCGATGATTGATGACACGCTCTCCGAGGCGCGCGCTGCGCGCTATCG
CCATGCGGCGCGTCAACTGACCGCCTGTGAAACGGAGGACGCCCAGATTTCAGATTACAGGGGCCACCCGCCCCATGGCG
CGTATCTGCGCGACTTGCAAAAAGCACATGCGCGCAAATCGGGCTTTTGGGGGCGGCTGAGTTAG

Upstream 100 bases:

>100_bases
GTCCCTCAAAGACAGAGCACGCTCCTTCTTGAGGTGCCGTCAGATCCAAACAACAAAGCGCCCCACGGGCGCTTTTTCCA
TATCTGGAGGTGGGGTCCGC

Downstream 100 bases:

>100_bases
ATACGCCCAGCCTCATAGAAGGTTATGCATGCTGCGCCCCACTGCCCGCCGCATGCGTCAGGGCAGTGTCATCGCGGTAC
AGTCTGCCATTTAAAAACAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MAGKTLNKNNLVALGAEMLADLLLESVKGDAARQRRVRMALAANQGPETVAADVRKRFASIRRARSFISRKTQKTLAKEL
ANHTQLIEARIAPHAPDLAFDLLWAQLHLANDILDRTDDSQGVIANVMQEAMAAVTRLSSSLTRDPVALADDIFEAVSTD
SYGVFDTTVEALAEALGGSGLARLETLAERAREAPLSDADLLLFGYITDPQQREDRARNARDRASEMLLLDIADLRGDVD
AWLSHYAPEELTQDAIAPEASARLLDAGRAEEALALIEQALPNGDLWHDKADLDDAHFACLEALGRQEDLRSALWARFER
RLCPRALRQYLKRLPDFDDIEAAEQARQHVLTFAPIEVALGYCLDAPDLSLASELILARHPEIDGETFTCLAPLAEALRA
EFPLPAVLLWRAMIDDTLSEARAARYRHAARQLTACETEDAQISDYRGHPPHGAYLRDLQKAHARKSGFWGRLS

Sequences:

>Translated_474_residues
MAGKTLNKNNLVALGAEMLADLLLESVKGDAARQRRVRMALAANQGPETVAADVRKRFASIRRARSFISRKTQKTLAKEL
ANHTQLIEARIAPHAPDLAFDLLWAQLHLANDILDRTDDSQGVIANVMQEAMAAVTRLSSSLTRDPVALADDIFEAVSTD
SYGVFDTTVEALAEALGGSGLARLETLAERAREAPLSDADLLLFGYITDPQQREDRARNARDRASEMLLLDIADLRGDVD
AWLSHYAPEELTQDAIAPEASARLLDAGRAEEALALIEQALPNGDLWHDKADLDDAHFACLEALGRQEDLRSALWARFER
RLCPRALRQYLKRLPDFDDIEAAEQARQHVLTFAPIEVALGYCLDAPDLSLASELILARHPEIDGETFTCLAPLAEALRA
EFPLPAVLLWRAMIDDTLSEARAARYRHAARQLTACETEDAQISDYRGHPPHGAYLRDLQKAHARKSGFWGRLS
>Mature_473_residues
AGKTLNKNNLVALGAEMLADLLLESVKGDAARQRRVRMALAANQGPETVAADVRKRFASIRRARSFISRKTQKTLAKELA
NHTQLIEARIAPHAPDLAFDLLWAQLHLANDILDRTDDSQGVIANVMQEAMAAVTRLSSSLTRDPVALADDIFEAVSTDS
YGVFDTTVEALAEALGGSGLARLETLAERAREAPLSDADLLLFGYITDPQQREDRARNARDRASEMLLLDIADLRGDVDA
WLSHYAPEELTQDAIAPEASARLLDAGRAEEALALIEQALPNGDLWHDKADLDDAHFACLEALGRQEDLRSALWARFERR
LCPRALRQYLKRLPDFDDIEAAEQARQHVLTFAPIEVALGYCLDAPDLSLASELILARHPEIDGETFTCLAPLAEALRAE
FPLPAVLLWRAMIDDTLSEARAARYRHAARQLTACETEDAQISDYRGHPPHGAYLRDLQKAHARKSGFWGRLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52387; Mature: 52255

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKTLNKNNLVALGAEMLADLLLESVKGDAARQRRVRMALAANQGPETVAADVRKRFAS
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IRRARSFISRKTQKTLAKELANHTQLIEARIAPHAPDLAFDLLWAQLHLANDILDRTDDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
QGVIANVMQEAMAAVTRLSSSLTRDPVALADDIFEAVSTDSYGVFDTTVEALAEALGGSG
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
LARLETLAERAREAPLSDADLLLFGYITDPQQREDRARNARDRASEMLLLDIADLRGDVD
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AWLSHYAPEELTQDAIAPEASARLLDAGRAEEALALIEQALPNGDLWHDKADLDDAHFAC
HHHHHCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
LEALGRQEDLRSALWARFERRLCPRALRQYLKRLPDFDDIEAAEQARQHVLTFAPIEVAL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
GYCLDAPDLSLASELILARHPEIDGETFTCLAPLAEALRAEFPLPAVLLWRAMIDDTLSE
HHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
ARAARYRHAARQLTACETEDAQISDYRGHPPHGAYLRDLQKAHARKSGFWGRLS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AGKTLNKNNLVALGAEMLADLLLESVKGDAARQRRVRMALAANQGPETVAADVRKRFAS
CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IRRARSFISRKTQKTLAKELANHTQLIEARIAPHAPDLAFDLLWAQLHLANDILDRTDDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
QGVIANVMQEAMAAVTRLSSSLTRDPVALADDIFEAVSTDSYGVFDTTVEALAEALGGSG
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
LARLETLAERAREAPLSDADLLLFGYITDPQQREDRARNARDRASEMLLLDIADLRGDVD
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AWLSHYAPEELTQDAIAPEASARLLDAGRAEEALALIEQALPNGDLWHDKADLDDAHFAC
HHHHHCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
LEALGRQEDLRSALWARFERRLCPRALRQYLKRLPDFDDIEAAEQARQHVLTFAPIEVAL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
GYCLDAPDLSLASELILARHPEIDGETFTCLAPLAEALRAEFPLPAVLLWRAMIDDTLSE
HHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
ARAARYRHAARQLTACETEDAQISDYRGHPPHGAYLRDLQKAHARKSGFWGRLS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA