Click here to switch to the map view.

The map label for this gene is rbfA

Identifier: 99079927

GI number: 99079927

Start: 89204

End: 89599

Strand: Reverse

Name: rbfA

Synonym: TM1040_0086

Alternate gene names: 99079927

Gene position: 89599-89204 (Counterclockwise)

Preceding gene: 99079929

Following gene: 99079926

Centisome position: 2.8

GC content: 60.61

Gene sequence:

>396_bases
ATGGCAAAGAACAAGTTCCACGACGGGCCCGGCCCCTCTCAACGTCAGCTTCGCGTCGGCGAAGTCATCCGGCGCACACT
TTCCGAAGTGCTGGCGCGTGGTGACATCCATGATCCGGAGCTGAACCGTCTCTCTATCACTGTCGGCGAAGTGCGCACCT
CGCCGGATCTCAAGATCGCAACGGCCTATGTGCTGCCTCTCGGAGGCAAGGGCCAAGAGGACGTGCTGCAACTGCTCGCA
CGCAACAAGAGCGAGCTGCGCCGCGCCATTGGCAAGAAGACCGGACTGAAATTCACCCCCGATCTGCGATTCCAGATCGA
CGAGACTTTTGATCGCATGGATGACACCCGGCGGCTGTTCAATCAGGACGCGGTGCGCCGCGATCTGGAGGACTGA

Upstream 100 bases:

>100_bases
CCGTCATGGCCTCACTCTCTGATTGGACTATCCGCTGGATTCCTCCTACCCTGCTGAGGACCGCTTGGCAAAGGGCGGCT
TTCGGCATAGATCGAGTCTT

Downstream 100 bases:

>100_bases
GGCCATGTGGCGCGCTCTGCTGTGGGGCCTGCCTCTTGGGATTGTGCTTTGGTCGGGACAGGCCTCTGCCGTCGAGTGCC
AGGACCTGGCCTATGAAGGC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MAKNKFHDGPGPSQRQLRVGEVIRRTLSEVLARGDIHDPELNRLSITVGEVRTSPDLKIATAYVLPLGGKGQEDVLQLLA
RNKSELRRAIGKKTGLKFTPDLRFQIDETFDRMDDTRRLFNQDAVRRDLED

Sequences:

>Translated_131_residues
MAKNKFHDGPGPSQRQLRVGEVIRRTLSEVLARGDIHDPELNRLSITVGEVRTSPDLKIATAYVLPLGGKGQEDVLQLLA
RNKSELRRAIGKKTGLKFTPDLRFQIDETFDRMDDTRRLFNQDAVRRDLED
>Mature_130_residues
AKNKFHDGPGPSQRQLRVGEVIRRTLSEVLARGDIHDPELNRLSITVGEVRTSPDLKIATAYVLPLGGKGQEDVLQLLAR
NKSELRRAIGKKTGLKFTPDLRFQIDETFDRMDDTRRLFNQDAVRRDLED

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_SILST (Q1GKJ7)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_612081.1
- ProteinModelPortal:   Q1GKJ7
- STRING:   Q1GKJ7
- GeneID:   4078752
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_0086
- NMPDR:   fig|292414.1.peg.1138
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   PRK00521
- BioCyc:   SSP292414:TM1040_0086-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14910; Mature: 14779

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNKFHDGPGPSQRQLRVGEVIRRTLSEVLARGDIHDPELNRLSITVGEVRTSPDLKIA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEE
TAYVLPLGGKGQEDVLQLLARNKSELRRAIGKKTGLKFTPDLRFQIDETFDRMDDTRRLF
EEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHH
NQDAVRRDLED
HHHHHHHCCCC
>Mature Secondary Structure 
AKNKFHDGPGPSQRQLRVGEVIRRTLSEVLARGDIHDPELNRLSITVGEVRTSPDLKIA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEE
TAYVLPLGGKGQEDVLQLLARNKSELRRAIGKKTGLKFTPDLRFQIDETFDRMDDTRRLF
EEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHH
NQDAVRRDLED
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA