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The map label for this gene is ddpA [H]

Identifier: 99079879

GI number: 99079879

Start: 39490

End: 41088

Strand: Reverse

Name: ddpA [H]

Synonym: TM1040_0038

Alternate gene names: 99079879

Gene position: 41088-39490 (Counterclockwise)

Preceding gene: 99079880

Following gene: 99079878

Centisome position: 1.28

GC content: 59.16

Gene sequence:

>1599_bases
ATGAACGCTTTTTCCAAACTAATCGGCTCTGCTGCACTTGGGCTCGCGCTGGGTGTCACCGCCCTGCCGGCGGTCGCCGC
GACACCAGACAATATGCTGGTCATCGCCAACCGTATCGACGACATCACCACGCTGGATCCGGCGCAAAGCTTTGAATTTG
CGGGCGCGGATGTGATCCGCAACATGTACGGCAAGCTGGTGAATTTCGACCCCTCCAACCTTGAGGCAGGCTATCAGCCC
GATCTGGCCGAAAGCTGGACTGTCTCGGAAGATGGCAAAACCATCACCTTCACCATGCGCGAGGGCGTCAAGTTCCACTC
TGGCAACCCGGTTCGGGCGGAAGATGCGGCCTTCTCACTGCGCCGCGTGATCAAGCTCAACAAAACGCCGTCGTTCATCC
TGACACAGTTTGGGTTCACTCCGGAAAACGTCGATGAGATGATCACCGTCGATGGCAACACCGTGTCGATCACGACCGAC
AAACGCTATGCGACCTCCTTTGTGCTGAACTGCCTGACAGCGACCTTGGGCGCAATCGTCGACGAAAAACTGGTGATGGA
GCACGACAAGGACGGCGACCTCGGCAACGAGTGGCTGATGACCAACTCCGCCGGCTCCGGCCCCTACAAGCTGGCCTCTT
GGAAGCCCAAGGAAAGCGTCACGCTGACCGCAAACCCAGACTACTATGAAGGCGCCCCGGCGATGCAGCGCGTGATCGTG
CGTCACGTTCAGGAAAGTGCGACCCAGCGCCTGATGCTGGAGCGCGGCGATATTGACGTGGCTCGTGACCTGACCCCTGC
GGATGTGGACGGCCTGGCAGGTATCGACGGCGTCGAAGTGCAGCGCGAGATGCGCGGTCGCCTGATGTATGTGTCCTTCA
ACCAAAAGCATCCTGAGCTCTCCAAGCCGCAGGTCCGTCAGGCGCTGAAGTATCTGATCGACTATGACGGCATGGAAAAC
AGCTTCCTCAAGAACTGGTATGTGAAGCACCAGAACTTCCTGCCAAAGACCTATCTGGGTGCCGTGGATGAAAACCCCTT
CTCGCTCAATATCGAGAAAGCCAAGGAATTGCTGGCAGAGGCCGGTGTGCCCGAAGGGCTGGAGCTGACGGTTGGTGTAC
GCGAGGCGCAAGAGCGTCTGGAGATCGCGCAATCGCTGCAAAACACCTTTTCGCAGGCCGGCATCAAGCTGAACCTCGAG
GTCGGCACCGGCAAGCAGGTTCTGGGCAAGTACCGCGCGCGGGAACTGGACATCTACCTTGGCGCCTGGGGTCCGGATTA
TCCCGATCCTCAGACCAACGCGGGCACATTTGCCTATAACCCCGACAACTCTGACGCGGCCAATGCAACGGGCCTTCTGG
CGTGGCGCAACGGTTGGGACACTGCAGGGCTGACCGACAAAGTCGCCGCAGCCGTGGTCGAAGGCGATACCGTGAAACGT
GCAGACATGTATCACGAGATCCAGGCCGAGTTCCGCGATACCGCGCCTTTTGCCGTGATGTTCCAGCTGGTTGAACAGGC
TGGCATCAGCGAAAAGGTCGAGGGTCTGAACCTTGGTGGCGCGATCACCGCAGCCGCTTACTGGGACGTGACCAAGTAA

Upstream 100 bases:

>100_bases
TGAAAACTGGCTCCGAGTCCTGGGCAAGACCTGGGGAGAATAACCAAAAGCCGGGCAAAAACCGGCGTTTATAATCAAAT
CAAAACAGGGAGTTCATTAA

Downstream 100 bases:

>100_bases
GATGGCGTTTTACAGCAACGTCCCGAAGAGGCAGCCTTGGCTGCCTCTTCCCCCTTGGGCAAGAAGCATGGGGATCACCC
TGCTTTCCGTCTCAATCACC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MNAFSKLIGSAALGLALGVTALPAVAATPDNMLVIANRIDDITTLDPAQSFEFAGADVIRNMYGKLVNFDPSNLEAGYQP
DLAESWTVSEDGKTITFTMREGVKFHSGNPVRAEDAAFSLRRVIKLNKTPSFILTQFGFTPENVDEMITVDGNTVSITTD
KRYATSFVLNCLTATLGAIVDEKLVMEHDKDGDLGNEWLMTNSAGSGPYKLASWKPKESVTLTANPDYYEGAPAMQRVIV
RHVQESATQRLMLERGDIDVARDLTPADVDGLAGIDGVEVQREMRGRLMYVSFNQKHPELSKPQVRQALKYLIDYDGMEN
SFLKNWYVKHQNFLPKTYLGAVDENPFSLNIEKAKELLAEAGVPEGLELTVGVREAQERLEIAQSLQNTFSQAGIKLNLE
VGTGKQVLGKYRARELDIYLGAWGPDYPDPQTNAGTFAYNPDNSDAANATGLLAWRNGWDTAGLTDKVAAAVVEGDTVKR
ADMYHEIQAEFRDTAPFAVMFQLVEQAGISEKVEGLNLGGAITAAAYWDVTK

Sequences:

>Translated_532_residues
MNAFSKLIGSAALGLALGVTALPAVAATPDNMLVIANRIDDITTLDPAQSFEFAGADVIRNMYGKLVNFDPSNLEAGYQP
DLAESWTVSEDGKTITFTMREGVKFHSGNPVRAEDAAFSLRRVIKLNKTPSFILTQFGFTPENVDEMITVDGNTVSITTD
KRYATSFVLNCLTATLGAIVDEKLVMEHDKDGDLGNEWLMTNSAGSGPYKLASWKPKESVTLTANPDYYEGAPAMQRVIV
RHVQESATQRLMLERGDIDVARDLTPADVDGLAGIDGVEVQREMRGRLMYVSFNQKHPELSKPQVRQALKYLIDYDGMEN
SFLKNWYVKHQNFLPKTYLGAVDENPFSLNIEKAKELLAEAGVPEGLELTVGVREAQERLEIAQSLQNTFSQAGIKLNLE
VGTGKQVLGKYRARELDIYLGAWGPDYPDPQTNAGTFAYNPDNSDAANATGLLAWRNGWDTAGLTDKVAAAVVEGDTVKR
ADMYHEIQAEFRDTAPFAVMFQLVEQAGISEKVEGLNLGGAITAAAYWDVTK
>Mature_532_residues
MNAFSKLIGSAALGLALGVTALPAVAATPDNMLVIANRIDDITTLDPAQSFEFAGADVIRNMYGKLVNFDPSNLEAGYQP
DLAESWTVSEDGKTITFTMREGVKFHSGNPVRAEDAAFSLRRVIKLNKTPSFILTQFGFTPENVDEMITVDGNTVSITTD
KRYATSFVLNCLTATLGAIVDEKLVMEHDKDGDLGNEWLMTNSAGSGPYKLASWKPKESVTLTANPDYYEGAPAMQRVIV
RHVQESATQRLMLERGDIDVARDLTPADVDGLAGIDGVEVQREMRGRLMYVSFNQKHPELSKPQVRQALKYLIDYDGMEN
SFLKNWYVKHQNFLPKTYLGAVDENPFSLNIEKAKELLAEAGVPEGLELTVGVREAQERLEIAQSLQNTFSQAGIKLNLE
VGTGKQVLGKYRARELDIYLGAWGPDYPDPQTNAGTFAYNPDNSDAANATGLLAWRNGWDTAGLTDKVAAAVVEGDTVKR
ADMYHEIQAEFRDTAPFAVMFQLVEQAGISEKVEGLNLGGAITAAAYWDVTK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=509, Percent_Identity=27.7013752455796, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1789966, Length=474, Percent_Identity=25.3164556962025, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI1787052, Length=390, Percent_Identity=26.1538461538462, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1787495, Length=450, Percent_Identity=23.7777777777778, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081878, Length=538, Percent_Identity=25.2788104089219, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787551, Length=414, Percent_Identity=24.1545893719807, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58300; Mature: 58300

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAFSKLIGSAALGLALGVTALPAVAATPDNMLVIANRIDDITTLDPAQSFEFAGADVIR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHCCCCCCHHHHH
NMYGKLVNFDPSNLEAGYQPDLAESWTVSEDGKTITFTMREGVKFHSGNPVRAEDAAFSL
HHHHHEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCEECCCCCCCHHHHHHHH
RRVIKLNKTPSFILTQFGFTPENVDEMITVDGNTVSITTDKRYATSFVLNCLTATLGAIV
HHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHH
DEKLVMEHDKDGDLGNEWLMTNSAGSGPYKLASWKPKESVTLTANPDYYEGAPAMQRVIV
HHHHHHCCCCCCCCCCCEEEECCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHH
RHVQESATQRLMLERGDIDVARDLTPADVDGLAGIDGVEVQREMRGRLMYVSFNQKHPEL
HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCC
SKPQVRQALKYLIDYDGMENSFLKNWYVKHQNFLPKTYLGAVDENPFSLNIEKAKELLAE
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEHHHHHHHHHH
AGVPEGLELTVGVREAQERLEIAQSLQNTFSQAGIKLNLEVGTGKQVLGKYRARELDIYL
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHCCEEEEEEE
GAWGPDYPDPQTNAGTFAYNPDNSDAANATGLLAWRNGWDTAGLTDKVAAAVVEGDTVKR
ECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHH
ADMYHEIQAEFRDTAPFAVMFQLVEQAGISEKVEGLNLGGAITAAAYWDVTK
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MNAFSKLIGSAALGLALGVTALPAVAATPDNMLVIANRIDDITTLDPAQSFEFAGADVIR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHCCCCCCHHHHH
NMYGKLVNFDPSNLEAGYQPDLAESWTVSEDGKTITFTMREGVKFHSGNPVRAEDAAFSL
HHHHHEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCEECCCCCCCHHHHHHHH
RRVIKLNKTPSFILTQFGFTPENVDEMITVDGNTVSITTDKRYATSFVLNCLTATLGAIV
HHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHH
DEKLVMEHDKDGDLGNEWLMTNSAGSGPYKLASWKPKESVTLTANPDYYEGAPAMQRVIV
HHHHHHCCCCCCCCCCCEEEECCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHH
RHVQESATQRLMLERGDIDVARDLTPADVDGLAGIDGVEVQREMRGRLMYVSFNQKHPEL
HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCC
SKPQVRQALKYLIDYDGMENSFLKNWYVKHQNFLPKTYLGAVDENPFSLNIEKAKELLAE
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEHHHHHHHHHH
AGVPEGLELTVGVREAQERLEIAQSLQNTFSQAGIKLNLEVGTGKQVLGKYRARELDIYL
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHCCEEEEEEE
GAWGPDYPDPQTNAGTFAYNPDNSDAANATGLLAWRNGWDTAGLTDKVAAAVVEGDTVKR
ECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHH
ADMYHEIQAEFRDTAPFAVMFQLVEQAGISEKVEGLNLGGAITAAAYWDVTK
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]