Click here to switch to the map view.

The map label for this gene is ymdC [H]

Identifier: 99079873

GI number: 99079873

Start: 32737

End: 34287

Strand: Reverse

Name: ymdC [H]

Synonym: TM1040_0032

Alternate gene names: 99079873

Gene position: 34287-32737 (Counterclockwise)

Preceding gene: 99079875

Following gene: 99079868

Centisome position: 1.07

GC content: 57.51

Gene sequence:

>1551_bases
ATGATGCGGTTCTTAAAAACACTGGCTTTGATTGGCCTTACGCTTGCGGCATTTGTGATGCTCGCACGGCTTCTTTTTCC
TTTGCCCGACATTTCCAATCGCGAGATCAGCTCGGCCCTTCCGGCGAGCGATCAGACTTCGATCGGGGCGACAGTTGCAG
ATCTGAACGCGGCGCATGTCGGCCAGTCAGGGATCATCCCGCTGCGCAGCGGGACGGATGCGCTTGCAAGCCGGGTCGAA
CTGATCCGTCGCGCCGAAGCCTCGATCGACGCGCAATACTACATTTGGCACGACGACACCTCCGGGGTTCTCCTGCTAGA
GGAATTGCGCAACGCGGCGCTGCGGGGCGTGCGGGTCCGACTTCTGCTGGACGATAACGGCGTGCCTGGGCTTGACGCAA
CAATGGCTACGCTCAACGCGCAACCCAATTTCGAAATCCGACTGTTCAACCCCTCAACGATCCGGCGCCCAAAGCTCTTG
GGCTACAGCTTTGATTTCTTTCGGATGAACCGGAGAATGCACAACAAGTCCCTTATCGTGGACGGGGCGGTCGCGATCAT
TGGCGGGCGCAACATTGGTGACGAGTATTTCGACGTGCAGCGGGATGCATTTTATATCGACATGGATGCGCTGGCTGCGG
GCAAAGTGGTGCCGGAAACGGCCACCGTCTTTGATGACTACTGGAACAGCGCCTCCGTTTTTGCGCTCGAGACGATTGTA
TCATCCGATGGGAACCTGATTACCTTTGATCAACGCGTATCAGAGGTGATGGCCACACCAGAGGCTCAACGCCTGATGGG
CGATCTGCAAAGCAGTGCAGATAAATTCGCGCGTGGTGAGATGCCGATGGAGTGGACAAATGTTCGCGTGGTGGCCGATG
ACCCTGTGAAAGGTCAGGGCAGCGCGACATCAGACCAGTTGATGATCTCTCGTCTGGGCGAGATCCTCGGCCAGGTCGAG
ACCCGCTTGGATCTAGTTTCGGCCTATTTTGTACCCGGGCAGCGAGGAACGGAGTACCTCACGGATTTGGCGGCTGCTGG
CGTGGATGTGCGTGTGTTGACCAATGCGATGAACACCACGGATGTCTTGATGGTGCATTCTGGCTACACGCGGTACCGTC
GCGCGCTGCTGGAAGCAGATGTTTCGCTCTACGAGTTGAAACTGCGCGCTCAGATGTCGGCTGACGCCAACCGGCAACTC
AAACCCTTTGGTCTTTCGGGGGCGAGCCTGCACGCCAAGACCTTTGCCGTCGACGGTGATCGCGTTTTTATCGGCTCTTT
CAACTTTGATCCGCGCTCGGCCACCCTAAATTGCGAGATGGGGTTTCTCATCGAAAGTCCGACGCTCGCCGGGCAGGTCA
GCGCAGGCTTTGACGGCCCACTCCTGACGGTGTCCTATCAACCGGCGCTGACACCCAAAGGCAAGATGATATGGCGCGAG
CCAATCGAAGATGGCGAGACATTGATCTACCAAGAAGAGCCCGGCGCCACCTGGTTCCAGCAGATTGCAATCGCGGTGAT
TGGCGTGCTGCCGGTTGAATGGCTTTTGTGA

Upstream 100 bases:

>100_bases
AGGCTGGCTTCTGCGGCTCAATGTCTACACCGGTTTGCACATGAGACATGTGGCAAGATTTTCCCGCTGCAGCGCAGTGG
TTAGGTGCTAGCATGCGAGG

Downstream 100 bases:

>100_bases
TCAAGACAAGCGCTGAGGATCTCACAGCTCACTGATCTACGGGCAAGCCACTTGGGACTTCTGCGGGAACGCCAAGACGC
CCCTTTGCGGCCTCTTCATC

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MMRFLKTLALIGLTLAAFVMLARLLFPLPDISNREISSALPASDQTSIGATVADLNAAHVGQSGIIPLRSGTDALASRVE
LIRRAEASIDAQYYIWHDDTSGVLLLEELRNAALRGVRVRLLLDDNGVPGLDATMATLNAQPNFEIRLFNPSTIRRPKLL
GYSFDFFRMNRRMHNKSLIVDGAVAIIGGRNIGDEYFDVQRDAFYIDMDALAAGKVVPETATVFDDYWNSASVFALETIV
SSDGNLITFDQRVSEVMATPEAQRLMGDLQSSADKFARGEMPMEWTNVRVVADDPVKGQGSATSDQLMISRLGEILGQVE
TRLDLVSAYFVPGQRGTEYLTDLAAAGVDVRVLTNAMNTTDVLMVHSGYTRYRRALLEADVSLYELKLRAQMSADANRQL
KPFGLSGASLHAKTFAVDGDRVFIGSFNFDPRSATLNCEMGFLIESPTLAGQVSAGFDGPLLTVSYQPALTPKGKMIWRE
PIEDGETLIYQEEPGATWFQQIAIAVIGVLPVEWLL

Sequences:

>Translated_516_residues
MMRFLKTLALIGLTLAAFVMLARLLFPLPDISNREISSALPASDQTSIGATVADLNAAHVGQSGIIPLRSGTDALASRVE
LIRRAEASIDAQYYIWHDDTSGVLLLEELRNAALRGVRVRLLLDDNGVPGLDATMATLNAQPNFEIRLFNPSTIRRPKLL
GYSFDFFRMNRRMHNKSLIVDGAVAIIGGRNIGDEYFDVQRDAFYIDMDALAAGKVVPETATVFDDYWNSASVFALETIV
SSDGNLITFDQRVSEVMATPEAQRLMGDLQSSADKFARGEMPMEWTNVRVVADDPVKGQGSATSDQLMISRLGEILGQVE
TRLDLVSAYFVPGQRGTEYLTDLAAAGVDVRVLTNAMNTTDVLMVHSGYTRYRRALLEADVSLYELKLRAQMSADANRQL
KPFGLSGASLHAKTFAVDGDRVFIGSFNFDPRSATLNCEMGFLIESPTLAGQVSAGFDGPLLTVSYQPALTPKGKMIWRE
PIEDGETLIYQEEPGATWFQQIAIAVIGVLPVEWLL
>Mature_516_residues
MMRFLKTLALIGLTLAAFVMLARLLFPLPDISNREISSALPASDQTSIGATVADLNAAHVGQSGIIPLRSGTDALASRVE
LIRRAEASIDAQYYIWHDDTSGVLLLEELRNAALRGVRVRLLLDDNGVPGLDATMATLNAQPNFEIRLFNPSTIRRPKLL
GYSFDFFRMNRRMHNKSLIVDGAVAIIGGRNIGDEYFDVQRDAFYIDMDALAAGKVVPETATVFDDYWNSASVFALETIV
SSDGNLITFDQRVSEVMATPEAQRLMGDLQSSADKFARGEMPMEWTNVRVVADDPVKGQGSATSDQLMISRLGEILGQVE
TRLDLVSAYFVPGQRGTEYLTDLAAAGVDVRVLTNAMNTTDVLMVHSGYTRYRRALLEADVSLYELKLRAQMSADANRQL
KPFGLSGASLHAKTFAVDGDRVFIGSFNFDPRSATLNCEMGFLIESPTLAGQVSAGFDGPLLTVSYQPALTPKGKMIWRE
PIEDGETLIYQEEPGATWFQQIAIAVIGVLPVEWLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=473, Percent_Identity=42.7061310782241, Blast_Score=370, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56574; Mature: 56574

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRFLKTLALIGLTLAAFVMLARLLFPLPDISNREISSALPASDQTSIGATVADLNAAHV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCHHHC
GQSGIIPLRSGTDALASRVELIRRAEASIDAQYYIWHDDTSGVLLLEELRNAALRGVRVR
CCCCCEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEHHHHHHHHHCCEEEE
LLLDDNGVPGLDATMATLNAQPNFEIRLFNPSTIRRPKLLGYSFDFFRMNRRMHNKSLIV
EEECCCCCCCCCHHHEEECCCCCEEEEEECCCCCCCCEEECCCHHHHHHHHHHCCCEEEE
DGAVAIIGGRNIGDEYFDVQRDAFYIDMDALAAGKVVPETATVFDDYWNSASVFALETIV
ECEEEEEECCCCCCHHHHCCCCEEEEEHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEHH
SSDGNLITFDQRVSEVMATPEAQRLMGDLQSSADKFARGEMPMEWTNVRVVADDPVKGQG
CCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEECEEEEEECCCCCCCC
SATSDQLMISRLGEILGQVETRLDLVSAYFVPGQRGTEYLTDLAAAGVDVRVLTNAMNTT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCEEEEEECCCCCC
DVLMVHSGYTRYRRALLEADVSLYELKLRAQMSADANRQLKPFGLSGASLHAKTFAVDGD
EEEEEECCHHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCEEEEEEEECCC
RVFIGSFNFDPRSATLNCEMGFLIESPTLAGQVSAGFDGPLLTVSYQPALTPKGKMIWRE
EEEEEECCCCCCCEEEEEEEEEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCEEEEC
PIEDGETLIYQEEPGATWFQQIAIAVIGVLPVEWLL
CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMRFLKTLALIGLTLAAFVMLARLLFPLPDISNREISSALPASDQTSIGATVADLNAAHV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCHHHC
GQSGIIPLRSGTDALASRVELIRRAEASIDAQYYIWHDDTSGVLLLEELRNAALRGVRVR
CCCCCEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEHHHHHHHHHCCEEEE
LLLDDNGVPGLDATMATLNAQPNFEIRLFNPSTIRRPKLLGYSFDFFRMNRRMHNKSLIV
EEECCCCCCCCCHHHEEECCCCCEEEEEECCCCCCCCEEECCCHHHHHHHHHHCCCEEEE
DGAVAIIGGRNIGDEYFDVQRDAFYIDMDALAAGKVVPETATVFDDYWNSASVFALETIV
ECEEEEEECCCCCCHHHHCCCCEEEEEHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEHH
SSDGNLITFDQRVSEVMATPEAQRLMGDLQSSADKFARGEMPMEWTNVRVVADDPVKGQG
CCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEECEEEEEECCCCCCCC
SATSDQLMISRLGEILGQVETRLDLVSAYFVPGQRGTEYLTDLAAAGVDVRVLTNAMNTT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCEEEEEECCCCCC
DVLMVHSGYTRYRRALLEADVSLYELKLRAQMSADANRQLKPFGLSGASLHAKTFAVDGD
EEEEEECCHHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCEEEEEEEECCC
RVFIGSFNFDPRSATLNCEMGFLIESPTLAGQVSAGFDGPLLTVSYQPALTPKGKMIWRE
EEEEEECCCCCCCEEEEEEEEEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCEEEEC
PIEDGETLIYQEEPGATWFQQIAIAVIGVLPVEWLL
CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]