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The map label for this gene is ycdC [C]

Identifier: 94985408

GI number: 94985408

Start: 1388824

End: 1389528

Strand: Reverse

Name: ycdC [C]

Synonym: Dgeo_1307

Alternate gene names: 94985408

Gene position: 1389528-1388824 (Counterclockwise)

Preceding gene: 94985410

Following gene: 94985405

Centisome position: 56.32

GC content: 70.92

Gene sequence:

>705_bases
GTGAGAGGGGGGCTGGGAGAAGCCCGGCTGTGGCGCTACCCTAAGGCTGTGAAGGTCGACCGCTCCGAACAGGATGAGGC
CCGGCGCGAACGCATCGCCCGCGCCGCCTTCGAGCTGTTTGCCCGCAGCGGGCTGGAGGGCACCAGCGTGCAGGACATCG
CCCGCGCCGCCTTTGTGAGCCGCACCAATCTCTACCGCTACTACCCCAGCAAAGTGCATATGCTGCTGGCTCACTTTGAG
CGTACGGTACGCGACACGCACGACGAGGCTGTGCGGAAGCTGCGGGCGGGCGCGGCTCCCCAGGCGGTGTGGGGGCAGGT
GACCGCTCGCATGGCCGATCTCGGCGTGCGCTACCGCCACCTCGTCGGGGCGGTGGGCCACGCCGTGCTGGGCGCGCGGG
CAGCCCACCCCGAGACCCAGGCGGGCGAGGGGTTCCGCACCGCGCTGACCCTGGTGGCGCTGGTTGAACCCGTGTTGATC
GCCATGCGCGACCGCGGCGCCCTGCGGGGTGGGGTGGATACCCATCTGCTGAGCGCGCTGTTGGTGGATGCCTGCCTGCT
GGCCCTGCTGCACGGCGGCCACCGTGACCAGCGCGAGGTGCTGCGCGACTGGCAGGACCGCTTCAGCCTGCTGCTGCATG
GTGCCCTTGCGCCGGACACGGCAGAAGGGCGGGAAAGCGGCCTGATTGTGCCGGAGCGCGCGTAG

Upstream 100 bases:

>100_bases
GGCGGAGTTCCTCCATGCCATGTTGGGGCAAGACCTGCACAGGGGGCAGCATAGCGTCTGGGGAGTGAAGGAAACTGTGC
GGACCGGGAGAGGACCAACC

Downstream 100 bases:

>100_bases
GGGGAAATAAGGCGGGCGTGGGATGTGCGTCAACGCCTGCGCCCACCCGGAGGAACACCCTGGAGGCTTTGCCGCCTGCG
CAGGTTCAGCCCGTGCGGAT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRGGLGEARLWRYPKAVKVDRSEQDEARRERIARAAFELFARSGLEGTSVQDIARAAFVSRTNLYRYYPSKVHMLLAHFE
RTVRDTHDEAVRKLRAGAAPQAVWGQVTARMADLGVRYRHLVGAVGHAVLGARAAHPETQAGEGFRTALTLVALVEPVLI
AMRDRGALRGGVDTHLLSALLVDACLLALLHGGHRDQREVLRDWQDRFSLLLHGALAPDTAEGRESGLIVPERA

Sequences:

>Translated_234_residues
MRGGLGEARLWRYPKAVKVDRSEQDEARRERIARAAFELFARSGLEGTSVQDIARAAFVSRTNLYRYYPSKVHMLLAHFE
RTVRDTHDEAVRKLRAGAAPQAVWGQVTARMADLGVRYRHLVGAVGHAVLGARAAHPETQAGEGFRTALTLVALVEPVLI
AMRDRGALRGGVDTHLLSALLVDACLLALLHGGHRDQREVLRDWQDRFSLLLHGALAPDTAEGRESGLIVPERA
>Mature_234_residues
MRGGLGEARLWRYPKAVKVDRSEQDEARRERIARAAFELFARSGLEGTSVQDIARAAFVSRTNLYRYYPSKVHMLLAHFE
RTVRDTHDEAVRKLRAGAAPQAVWGQVTARMADLGVRYRHLVGAVGHAVLGARAAHPETQAGEGFRTALTLVALVEPVLI
AMRDRGALRGGVDTHLLSALLVDACLLALLHGGHRDQREVLRDWQDRFSLLLHGALAPDTAEGRESGLIVPERA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25821; Mature: 25821

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGGLGEARLWRYPKAVKVDRSEQDEARRERIARAAFELFARSGLEGTSVQDIARAAFVS
CCCCCCCHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
RTNLYRYYPSKVHMLLAHFERTVRDTHDEAVRKLRAGAAPQAVWGQVTARMADLGVRYRH
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LVGAVGHAVLGARAAHPETQAGEGFRTALTLVALVEPVLIAMRDRGALRGGVDTHLLSAL
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LVDACLLALLHGGHRDQREVLRDWQDRFSLLLHGALAPDTAEGRESGLIVPERA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRGGLGEARLWRYPKAVKVDRSEQDEARRERIARAAFELFARSGLEGTSVQDIARAAFVS
CCCCCCCHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
RTNLYRYYPSKVHMLLAHFERTVRDTHDEAVRKLRAGAAPQAVWGQVTARMADLGVRYRH
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LVGAVGHAVLGARAAHPETQAGEGFRTALTLVALVEPVLIAMRDRGALRGGVDTHLLSAL
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LVDACLLALLHGGHRDQREVLRDWQDRFSLLLHGALAPDTAEGRESGLIVPERA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA