Click here to switch to the map view.

The map label for this gene is yciF [H]

Identifier: 94985131

GI number: 94985131

Start: 1097841

End: 1098404

Strand: Reverse

Name: yciF [H]

Synonym: Dgeo_1026

Alternate gene names: 94985131

Gene position: 1098404-1097841 (Counterclockwise)

Preceding gene: 94985132

Following gene: 94985127

Centisome position: 44.52

GC content: 64.01

Gene sequence:

>564_bases
ATGAGACAGGGTGGGTCGAAGCGAGGGAGGCTGAAGATGACGCAAAGCAGTGGACAGAGCGGCGGCATGAGCATGAAGAT
GTCGGACCTGCAAGACCTCTACGTAGAGCAGCTCCAGGACGTGTACTCGGCCGAGCAGCAGCTCACCCAGGCGCTCGGGC
AGATGGCCCAGGCCGCCAGCGACCCGCAGCTGAGCCAGGCCTTCCAGATGCACCTGCAACAGACCCAGCAGCAGGTTGGG
CGCTTGGAGCAAATCTTCCAGAACCTGGGCCAGCAGCCTGGCGGCAAGACCTGTAAGGCCATGCAGGGCATCGTGGCCGA
GGGGCAGGAAACCATTCAGGAAAAGGCCACGCCCGCCGTGCGTGACGCGGCCCTGATCGCCGCCGCTCAGCGCGCTGAGC
ACTATGAGATCTCGGCCTACGGCACCCTGCGCACCTATGCGCAGATCCTGGGCCGCCAGCAGGACGTGGACCTCTTGCGC
ACCACCGAGGACGAGGAAAAGGCCACCGACCAGAAGCTGACCGGCCTCGCCAGCTCCATCAATATGGAGGCAAACAACGG
GTAA

Upstream 100 bases:

>100_bases
GGCGAACCGAACAAAGGAAGCCGCAAGGAGAGCATAAAGCGAACTTCACAGCCTGCCCATCCTGCCTTCCCCCACAGCAT
GAAGACTGGGTCAGCACCCG

Downstream 100 bases:

>100_bases
GCCCGGTTATTCTGGGGCGCCTGCGGAGAAAACTCCAGCGGGCGTCTTTTTTGGGAATAAAACTGGACTGCTCATCTACC
TGCGGCATCCCGCTGCGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MRQGGSKRGRLKMTQSSGQSGGMSMKMSDLQDLYVEQLQDVYSAEQQLTQALGQMAQAASDPQLSQAFQMHLQQTQQQVG
RLEQIFQNLGQQPGGKTCKAMQGIVAEGQETIQEKATPAVRDAALIAAAQRAEHYEISAYGTLRTYAQILGRQQDVDLLR
TTEDEEKATDQKLTGLASSINMEANNG

Sequences:

>Translated_187_residues
MRQGGSKRGRLKMTQSSGQSGGMSMKMSDLQDLYVEQLQDVYSAEQQLTQALGQMAQAASDPQLSQAFQMHLQQTQQQVG
RLEQIFQNLGQQPGGKTCKAMQGIVAEGQETIQEKATPAVRDAALIAAAQRAEHYEISAYGTLRTYAQILGRQQDVDLLR
TTEDEEKATDQKLTGLASSINMEANNG
>Mature_187_residues
MRQGGSKRGRLKMTQSSGQSGGMSMKMSDLQDLYVEQLQDVYSAEQQLTQALGQMAQAASDPQLSQAFQMHLQQTQQQVG
RLEQIFQNLGQQPGGKTCKAMQGIVAEGQETIQEKATPAVRDAALIAAAQRAEHYEISAYGTLRTYAQILGRQQDVDLLR
TTEDEEKATDQKLTGLASSINMEANNG

Specific function: Unknown

COG id: COG3685

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787512, Length=164, Percent_Identity=46.3414634146341, Blast_Score=151, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010287
- InterPro:   IPR012347
- InterPro:   IPR009078 [H]

Pfam domain/function: PF05974 DUF892 [H]

EC number: NA

Molecular weight: Translated: 20454; Mature: 20454

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQGGSKRGRLKMTQSSGQSGGMSMKMSDLQDLYVEQLQDVYSAEQQLTQALGQMAQAAS
CCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DPQLSQAFQMHLQQTQQQVGRLEQIFQNLGQQPGGKTCKAMQGIVAEGQETIQEKATPAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH
RDAALIAAAQRAEHYEISAYGTLRTYAQILGRQQDVDLLRTTEDEEKATDQKLTGLASSI
HHHHHHHHHHHHHCEEHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
NMEANNG
CCCCCCC
>Mature Secondary Structure
MRQGGSKRGRLKMTQSSGQSGGMSMKMSDLQDLYVEQLQDVYSAEQQLTQALGQMAQAAS
CCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DPQLSQAFQMHLQQTQQQVGRLEQIFQNLGQQPGGKTCKAMQGIVAEGQETIQEKATPAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH
RDAALIAAAQRAEHYEISAYGTLRTYAQILGRQQDVDLLRTTEDEEKATDQKLTGLASSI
HHHHHHHHHHHHHCEEHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
NMEANNG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 8455549 [H]