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The map label for this gene is cycA [H]

Identifier: 94984917

GI number: 94984917

Start: 865034

End: 865510

Strand: Reverse

Name: cycA [H]

Synonym: Dgeo_0810

Alternate gene names: 94984917

Gene position: 865510-865034 (Counterclockwise)

Preceding gene: 94984922

Following gene: 94984913

Centisome position: 35.08

GC content: 66.25

Gene sequence:

>477_bases
ATGAGACAGCCTGTCCTTCTCCCATCGACCCTGATCAGGCTGGGCCTCCCCCTCGTGGCCCTGCTGGGCGGGGGAGCGGC
TGCGGCCCCGGACGGCAAAGCCCTGTACACGACCAACTGCGCAGGGTGCCACCAGGCAACGGGTCAGGGCGTAGCGGGCG
CGTTCCCGCCGCTGGCCGGACATGTGCCCGACCTGCTGGCCGCGTCGGGGGGCCGGGCGTATGTCGCCCATGTGGTGCTG
TATGGCCTCCAGGGCCAGATCAACGTGAAGGGCAAGACGTACAACGGGGCGATGCCTGCCTTTGGACAACTGTCAGACGC
GCAACTGGCCGCCATCCTCAACTACGTGAGCACCAGCTGGGGCAACAAACTCCCCAAGGGTCAGAAACCCTTCACTGCCG
CCGAACTGACCAAGGCCCGCCAGACCAAGAAGACGTCTGCCCAGGTCCATGCGCTGCGGCCCAAGACCTTGAAGTGA

Upstream 100 bases:

>100_bases
GGAATGGGCGGGGAATGTCTTGTCTCCCCTCGCTGCCCAGCCGGGGGTAGACTGGGAATGTCCGCTTGTCTTCGCCTCAC
ATTCAATGCTGGAGGTACAC

Downstream 100 bases:

>100_bases
GGAACCTCCCCGACGTGGGCCGGATGCGATCATAGCCACATCACTCGACCTGCGCCACCTGTGGAGGTCGGGGCAACGGG
TGCGTCTCGTCCCCTGATCG

Product: cytochrome c, class I

Products: NA

Alternate protein names: Cytochrome c552 [H]

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MRQPVLLPSTLIRLGLPLVALLGGGAAAAPDGKALYTTNCAGCHQATGQGVAGAFPPLAGHVPDLLAASGGRAYVAHVVL
YGLQGQINVKGKTYNGAMPAFGQLSDAQLAAILNYVSTSWGNKLPKGQKPFTAAELTKARQTKKTSAQVHALRPKTLK

Sequences:

>Translated_158_residues
MRQPVLLPSTLIRLGLPLVALLGGGAAAAPDGKALYTTNCAGCHQATGQGVAGAFPPLAGHVPDLLAASGGRAYVAHVVL
YGLQGQINVKGKTYNGAMPAFGQLSDAQLAAILNYVSTSWGNKLPKGQKPFTAAELTKARQTKKTSAQVHALRPKTLK
>Mature_158_residues
MRQPVLLPSTLIRLGLPLVALLGGGAAAAPDGKALYTTNCAGCHQATGQGVAGAFPPLAGHVPDLLAASGGRAYVAHVVL
YGLQGQINVKGKTYNGAMPAFGQLSDAQLAAILNYVSTSWGNKLPKGQKPFTAAELTKARQTKKTSAQVHALRPKTLK

Specific function: This monoheme basic protein appears to function as an electron donor to cytochrome oxidase in T.thermophilus [H]

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 16267; Mature: 16267

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQPVLLPSTLIRLGLPLVALLGGGAAAAPDGKALYTTNCAGCHQATGQGVAGAFPPLAG
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
HVPDLLAASGGRAYVAHVVLYGLQGQINVKGKTYNGAMPAFGQLSDAQLAAILNYVSTSW
CCHHHHHCCCCHHHHHHHHHHCCCCEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHC
GNKLPKGQKPFTAAELTKARQTKKTSAQVHALRPKTLK
CCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCC
>Mature Secondary Structure
MRQPVLLPSTLIRLGLPLVALLGGGAAAAPDGKALYTTNCAGCHQATGQGVAGAFPPLAG
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
HVPDLLAASGGRAYVAHVVLYGLQGQINVKGKTYNGAMPAFGQLSDAQLAAILNYVSTSW
CCHHHHHCCCCHHHHHHHHHHCCCCEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHHHC
GNKLPKGQKPFTAAELTKARQTKKTSAQVHALRPKTLK
CCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2986626; 11152119 [H]