| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
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The map label for this gene is bdbD [H]
Identifier: 94984799
GI number: 94984799
Start: 749932
End: 750618
Strand: Reverse
Name: bdbD [H]
Synonym: Dgeo_0692
Alternate gene names: 94984799
Gene position: 750618-749932 (Counterclockwise)
Preceding gene: 94984800
Following gene: 94984798
Centisome position: 30.42
GC content: 61.72
Gene sequence:
>687_bases GTGACCAGACTTCAGGGAAGCAACCAGAACCGCACGGTCCTGGTGATCGGCACACTGATCGCCGCCTTGCTGATCGCCCT CGCCCTCTTTGCCGCGCGCGGCAGGTCCAGCGGACAGACAGGAACCGCCAACTTCGACCTGACCGGACAGCCGGTCCTCG GACAGGAGAACGCACCAGTAACGCTGGTGGTGTTTGAAGACTTCAAATGCCCCAACTGCAAGCGGTTTGAGGAAGAGTTC ATGCCGGAACTCCGGTCGAAGTACATCGATACCGGCAAAGCCAAACTCATCTCTATGAACTTTCCCTTCATCGCCGCGAT GAGCAATCTGCCCGTTGACGACAGCAAGCTGGCTGCCCAGGCTGCCGAATGCGCCTACCTGCAGGGAGGGAGCGAAGCGT ACGACCGCATGAAGCAGATTCTCTTCCGCGCGCAGGGTGCAGAAAGCGAGGTGTGGGCCAGCAAGTCCCGCCTCAAGGAC CTGGCCGGGAGCGTGGAAGGAATCGATCAAGCGAAGTTCAACACCTGTCTTGACAACGACGAGACCGCTGCTGCCGTCGA GGCCGACAAGCAGCAGGCGGAGAAAGCAGGTGTGAGCGGCACCCCCTCGGTGTTCGTGAACGGCAAGCTGGTCAGCAGCT ACGACGCCGCGACCGTCGGCGCCGCCATTGACGCGGCCAGCCGGTGA
Upstream 100 bases:
>100_bases CCGGCCACCCCCCCTCAACCGGGCCGTCACAGCTGACCCTGAACCGCGCCGGGGCATCCGCCCGCGCCAAGGACCCGAGC GGGCCGTTACACTTTGAGGC
Downstream 100 bases:
>100_bases GGCCGGGGCATTGACTCGCGATAACCGCCTGTACCTCGCCTGGGTGGTGGCTCTCCTCGCCACGCTGGGCAGCCTGTGGT TCAGTGAGGTACGCCAGTTT
Product: DSBA oxidoreductase
Products: NA
Alternate protein names: Disulfide oxidoreductase D; Thiol-disulfide oxidoreductase D [H]
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MTRLQGSNQNRTVLVIGTLIAALLIALALFAARGRSSGQTGTANFDLTGQPVLGQENAPVTLVVFEDFKCPNCKRFEEEF MPELRSKYIDTGKAKLISMNFPFIAAMSNLPVDDSKLAAQAAECAYLQGGSEAYDRMKQILFRAQGAESEVWASKSRLKD LAGSVEGIDQAKFNTCLDNDETAAAVEADKQQAEKAGVSGTPSVFVNGKLVSSYDAATVGAAIDAASR
Sequences:
>Translated_228_residues MTRLQGSNQNRTVLVIGTLIAALLIALALFAARGRSSGQTGTANFDLTGQPVLGQENAPVTLVVFEDFKCPNCKRFEEEF MPELRSKYIDTGKAKLISMNFPFIAAMSNLPVDDSKLAAQAAECAYLQGGSEAYDRMKQILFRAQGAESEVWASKSRLKD LAGSVEGIDQAKFNTCLDNDETAAAVEADKQQAEKAGVSGTPSVFVNGKLVSSYDAATVGAAIDAASR >Mature_227_residues TRLQGSNQNRTVLVIGTLIAALLIALALFAARGRSSGQTGTANFDLTGQPVLGQENAPVTLVVFEDFKCPNCKRFEEEFM PELRSKYIDTGKAKLISMNFPFIAAMSNLPVDDSKLAAQAAECAYLQGGSEAYDRMKQILFRAQGAESEVWASKSRLKDL AGSVEGIDQAKFNTCLDNDETAAAVEADKQQAEKAGVSGTPSVFVNGKLVSSYDAATVGAAIDAASR
Specific function: May be required for disulfide bond formation in some proteins [H]
COG id: COG1651
COG function: function code O; Protein-disulfide isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thioredoxin family. DsbA subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001853 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF01323 DSBA [H]
EC number: NA
Molecular weight: Translated: 24284; Mature: 24152
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRLQGSNQNRTVLVIGTLIAALLIALALFAARGRSSGQTGTANFDLTGQPVLGQENAPV CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCE TLVVFEDFKCPNCKRFEEEFMPELRSKYIDTGKAKLISMNFPFIAAMSNLPVDDSKLAAQ EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCHHHHHHH AAECAYLQGGSEAYDRMKQILFRAQGAESEVWASKSRLKDLAGSVEGIDQAKFNTCLDND HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC ETAAAVEADKQQAEKAGVSGTPSVFVNGKLVSSYDAATVGAAIDAASR CCHHHHHHHHHHHHHCCCCCCCCEEECCEEECCCCHHHHHHHHHCCCC >Mature Secondary Structure TRLQGSNQNRTVLVIGTLIAALLIALALFAARGRSSGQTGTANFDLTGQPVLGQENAPV CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCE TLVVFEDFKCPNCKRFEEEFMPELRSKYIDTGKAKLISMNFPFIAAMSNLPVDDSKLAAQ EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCHHHHHHH AAECAYLQGGSEAYDRMKQILFRAQGAESEVWASKSRLKDLAGSVEGIDQAKFNTCLDND HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC ETAAAVEADKQQAEKAGVSGTPSVFVNGKLVSSYDAATVGAAIDAASR CCHHHHHHHHHHHHHCCCCCCCCEEECCEEECCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12721629 [H]