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The map label for this gene is rpoC

Identifier: 94984742

GI number: 94984742

Start: 685249

End: 689862

Strand: Reverse

Name: rpoC

Synonym: Dgeo_0635

Alternate gene names: 94984742

Gene position: 689862-685249 (Counterclockwise)

Preceding gene: 94984743

Following gene: 94984740

Centisome position: 27.96

GC content: 65.11

Gene sequence:

>4614_bases
TTGAAAGACTTCAGCAAGGTCCGTATCGCCATCGCCAGCCCCGCGAAGATTCGCGAGTGGAGCTTTGGTGAGGTGGAAAA
GCCGGAAACCATCAACTACCGCACCCTGAAGCCCGAGCGCGAAGGGCTGTTTGACGAGCGCATCTTCGGGCCCATCAAGG
ATTACGAGTGCGCCTGCGGCAAGTACAAGCGCCAACGCTACGAGGGCAAGGTCTGCGAACGCTGTGGCGTCGAGGTGACC
TCCTCCAAGGTGCGCCGCTACCGCATGGGCCACATCGATCTGGCGACGCCCGCCGCGCACATCTGGTATGTGAAGGACAC
GCCGAGCAAGATCGGCACGCTGCTTGACCTGTCGGCGGCGCAGCTGGAAAAGGTGCTGTACTTCAGCTCCTTCCTGGTGA
CCGATCCGCGCAACGCGCAGAAGGACGGCCGTCCCCTGCGCCGAGGCGAACTCCTCAGCGACGACGAGTACCGCGAGCTG
CGCTTCGGGCGGCAGGAGACGTACACGCTGCCCAGCGGCACCGAAGCGGCGGTGCGTGACGGCGAGTATGTGACGCGCGG
ACAGGTGCTGGGCGGCAACGTGGTCAGCAAGATGGACGGCCTCGCGCAGTACCGCTTCCCGCGCCGCGCCGAGATCGCCT
ACGCCGAGGAGGCCGAGGCCAGTCTGCCCCTGCCCAGCGACGTGCTGGTGCAGCAGGACAGTTTCCGCCCCGGCGAGATT
CTGGCCGAACTCGAGGGGGACGTGCAGATCACTGCTCCGGTAGACGGCACGGCTTTCTTGCTCGACATGGGCGAGGACAG
CGTGCTGGTGGAGCTGCGTGACAGCGCCGCCGAGGATGCTGCACAGGGCGAGGTGCTGGCCCGCGTGTATATCCCACATG
GCATGAACGTGCAGGTGGCCGAGGGCGAGGTGGTCGAAGCCGGAAGCGTGCTGGCGACCGCCGCGGCCGGAGATCGCCTG
CGTGTGAGCCGCGACAGCCGCCTCAGCAATGTCAACTTCCCCAAGAAGAAGGGGGACGTCAAGGTCACGGCACACTGGAC
CCGCCGCGTCGAGTACCGCATCGAACCGCAGATGCACGTGCTTGTCGGGGACGGCAGCGAGGTCCGCAAGGGCCAGAAGG
TCGTCGGCGCGATTGATAAGGAAGAAGAGGTCATCGCGGAAGCCGACGGCGTCATCACTCTGCACGCGCCCGCCTCGATT
ATTGTCAGCAAGGCCCGGGTGTACGCTTACCAGGACGAGCCGCTCGTGGTGAATGGCGACCGGGTGGAGCCGGGGGACGA
GCTGGCCGACTCGGGCAACCTGCGCTCGGAGATCTCGGGCCGGGTGGAGATCGATCTGGTGCGCAAGCAGGTGCGCGTGA
TTGAGTCCTACGACTTCGAGGCCAAGATGGGCGCCGAAGCCGTCAAGGAGCTGCTCGACGATCTGGACCTCGACCAGCTC
GAAGCTGAGCTGAGCGAGCAGATGAAGGACAACAGCCGCCACAAGCGCGCCAAGGCCCGCAAGCGGCTGGAAGTTGTGCG
CGCCTTTAAGCGCAGCGGCAACCACCCCTCCTGGATGATCCTGGAGACGGTGCCGGTGATGCCGCCTGACCTGCGCCCGA
TGGTGCAGGTGGACGGCGGGAGATTCGCGACTTCGGACCTCAACGACCTGTACCGCCGCCTGATCAACCGCAACAACCGC
CTGAAGAAGCTCATTGGGCAGGGCGCGCCCGACATGATCATCCGCAACGAGAAGCGCATGCTTCAGGAGGCGGTGGACGC
CCTGATTGACAACGGGCGGCGCGGCTCACCCGTCACCAACCCTGGTTCTGACCGCAGCCTGCGTTCCTTGACCGACCTGC
TGGGTGGCAAGCAGGGCCGCTTCCGGCAGAACCTGCTGGGCAAGCGCGTGGACTACTCGGGTCGAAGCGTGATCGTGGTC
GGCCCGCAGCTCAAGCTGCACCAGTGCGGCGTGCCCAAGCGGATGGCACTCGAACTCTTCAAGCCCTTTCTGTTCAAGGT
GCTCGAAGAAAAGGGTGAGGTCACCAACATCAAGCAGGCCCGCAAGATGCTAGAGCGGTACCGCGACACCCGTGACTCTG
TGTGGGACGCACTGGAAGAGGTGATTGAGGACAAGGTCGTGCTGCTCAACCGCGCCCCGACCCTGCACCGCCTCGGTATT
CAGGCGTTTGAGCCGGTGCTGGTCGAGGGGCAGTCCATCCAGCTGCACCCGCTGGTCTGTGAAGCCTTCAACGCCGACTT
TGACGGCGACCAGATGGCGATTCACGTGCCGCTCTCGGCGCAGGCGCAGGCCGAAGCGCGGATCCAGATGCTCTCCGCGC
ATAACCTGCTCTCGCCCGCGAACGGCGAGCCGAACGTGAAGCCCTCCCGCGACATCATCCTGGGCATCTTCACGCTGACG
CAACTCCGCAAAGACAACCTGGGCGCCGGGAGCGAGTTCGCCAACGAGCAAGACGCGCTGAAGGCGCTCGACGAGGGCCG
CGTGGCCCTGAACACGCCCATCCGAGTGAACGGTGTGGAAACCAGTCCTGGTCGCCTGAAGTACGTCTTCAGCTCGCCGG
ATGAGGCGATCATGGCCGTGGACCGCGGCGAGATCGATTATCAGGACCATGTCCGCATCCGCCTGAACGGGACGGTGTAC
GAGACCAGCGCGGGCCGCGTGATGTTCCGCCGACTCGTGCAGGAGGCGCTGGGAGCGCAGGGGCACCTGGTGGATACCCT
GGTGAACCTGGACACGGCCTACGAGAAAGACAGCCTCAAGGACATGGTGATGGCCTGCTACAAGGAGCTGGGCATCGAGG
CGACGGCAGGCCTCTTGGACGCGCTCAAGGACAGCGGCTTCAAGCTGTCTACCATCTCCGGGATCACCATCGGCATCGAT
GACATCGTGCTGCCGCCCAACAAACGCGAACTGCTGGCAGAAGCCGACGAGAAGCTGGCGGCCATCGAGCAAAACTACGA
GTTCGGCTTCATGACCGACGAGGAGCGCTACAAGCAGGTCGTGCAGCTGTGGAACGACACCACGGATGAGGTGAAGAACG
CGGTGTTCGAGAACTTCAGCCGCAACTACCCCTTCAATCCCCTCTGGATCATGAGCCAGTCGGGTGCCCGTGGGAATCCG
CAGCAGATTCGCCAGCTCGCCGGGATGCGCGGCCTGATGGCCCGCCCCGACGGCAGCACCATCGAGGTGCCCATCCGTGC
CTCGTTCCGCGAGGGCCTGACGGTGCTGGAGTACTTCATCTCCACCCACGGCGCCCGTAAGGGTGGTGCCGACACGGCAC
TCCGTACCGCCGACTCGGGTTACCTGACCCGCAAGCTGGTGGACGTGGCCCACGAGGTCGTCGTGCGCGACGTGGACTGC
GGGACCACCGACTACACGGTGATGCCGCTGGGCACGACCGACGAGCGCACCGGCGAATGGCGCACCCGCAAGGGCAGTGA
GATCGAGACCGCGATCTATGGCCGCACCCTGACGGCTGACGTGGAACTGTCGGATGGCCGCGTGATCCCGGCCGGCCAGA
TGCTGAGCCTGGAGGACGTGAAGGCGATCACCCGCGACGCGAAGGCCATTGGCGAGGTGTTTGTGCGCACGCCGCTGAAC
TGCCGCGTCCGCGCCGGGGTCTGCCAGAAGTGCTACGGCTACGACCTCTCGCAGGCCAAGCCGGTGTCCTTGGGCGAGGC
CGTGGGCGTGGTAGCTGCCGAATCCATCGGCGAACCCGGCACTCAGCTCACCATGCGGACTTTCCACACCGGTGGTGTGG
CGGGCGGCGGCGACATCACGATGGGTCTGCCGCGCGTGATTGAGCTGTTCGAGGCGCGCAAGCCTAAGACTCAGGCCGTG
GTGGCCGACCGTGACGGGGTGGTGCGCATCGAGGAGGAGGAGGAACGTTACCTGGTCCGCATTGAGGCCGAGGACGAAGC
CTTCAGCTCCAAGACACCGATGAAAATCAGCAAGAGCCTGCGCCTGATTGTGCGCGACGGCGACCACGTGGAAGCCGGGC
AGCCGCTCACACGCGGCGCGATCAATCCCCACGACCTGCTGCTGTACAAGGACACCGACGCCGCCCAGCGGTACCTGGTG
GAGGAAGTGCAGCGCGTGTACCGCTCGCAGGGCGTGAAGGTGCATGACAAGCACATCGAAGTGATCGTGCGCCAGATGCT
GCGCTACGTCGAGATCACCGACGGCGGCGACACCGACCTGCTTGAAGGGCAGACGGTCGAGCGCTGGGAAGTCGACCAGG
CAAACGATGCCCTGCCCGAGGGCAAGACGCCTGCGAGCTGGAAGCCGGTGCTGCTGGGCATCACCAAGAGCAGCCTGACC
ACCAAGAGCTGGCTGTCGGCTGCCTCCTTCCAGCACACGACGCACGTGCTGACGGAAGCTTCGATGCGCGGGCAGGTCGA
CGAACTGATCGGCCTCAAGGAGAATGTGATTCTCGGCAAGCTGATCCCGGCGGGCACGGGTCTCACCACCGTCCGCGAGA
TGCAGGTGGCCGACGAGCGCACCCTGGAGAAGTATGGCCAGACGAGCGTCAGCACAGATGCCGTGACCGGCAGCCAGCGC
TACGACGACACCCGCCCGAGCAGCACCTCCATCAACCCCAGCTACGGCGACTGA

Upstream 100 bases:

>100_bases
TGATGCCCAAGAGGTAAGGCCTGTGGGGTGAGATTTGAGAACACCCCACCGCCTCACGCTGCATCCCTGACAACACGCCT
CCCAGCACAGGAGCACGACT

Downstream 100 bases:

>100_bases
TCCGAGCTGAAGACAAAGACCAAAGCCCCCACCTGGAAACGGGTGGGGGTTTTGCATGAGGTGGGCGGGGCCAAGTGGCC
CATGACACTGCGAGGCGGCT

Product: DNA-directed RNA polymerase, subunit beta-prime

Products: NA

Alternate protein names: RNAP subunit beta'; RNA polymerase subunit beta'; Transcriptase subunit beta'

Number of amino acids: Translated: 1537; Mature: 1537

Protein sequence:

>1537_residues
MKDFSKVRIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACGKYKRQRYEGKVCERCGVEVT
SSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAAQLEKVLYFSSFLVTDPRNAQKDGRPLRRGELLSDDEYREL
RFGRQETYTLPSGTEAAVRDGEYVTRGQVLGGNVVSKMDGLAQYRFPRRAEIAYAEEAEASLPLPSDVLVQQDSFRPGEI
LAELEGDVQITAPVDGTAFLLDMGEDSVLVELRDSAAEDAAQGEVLARVYIPHGMNVQVAEGEVVEAGSVLATAAAGDRL
RVSRDSRLSNVNFPKKKGDVKVTAHWTRRVEYRIEPQMHVLVGDGSEVRKGQKVVGAIDKEEEVIAEADGVITLHAPASI
IVSKARVYAYQDEPLVVNGDRVEPGDELADSGNLRSEISGRVEIDLVRKQVRVIESYDFEAKMGAEAVKELLDDLDLDQL
EAELSEQMKDNSRHKRAKARKRLEVVRAFKRSGNHPSWMILETVPVMPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNR
LKKLIGQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVV
GPQLKLHQCGVPKRMALELFKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLGI
QAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSAHNLLSPANGEPNVKPSRDIILGIFTLT
QLRKDNLGAGSEFANEQDALKALDEGRVALNTPIRVNGVETSPGRLKYVFSSPDEAIMAVDRGEIDYQDHVRIRLNGTVY
ETSAGRVMFRRLVQEALGAQGHLVDTLVNLDTAYEKDSLKDMVMACYKELGIEATAGLLDALKDSGFKLSTISGITIGID
DIVLPPNKRELLAEADEKLAAIEQNYEFGFMTDEERYKQVVQLWNDTTDEVKNAVFENFSRNYPFNPLWIMSQSGARGNP
QQIRQLAGMRGLMARPDGSTIEVPIRASFREGLTVLEYFISTHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDC
GTTDYTVMPLGTTDERTGEWRTRKGSEIETAIYGRTLTADVELSDGRVIPAGQMLSLEDVKAITRDAKAIGEVFVRTPLN
CRVRAGVCQKCYGYDLSQAKPVSLGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGGDITMGLPRVIELFEARKPKTQAV
VADRDGVVRIEEEEERYLVRIEAEDEAFSSKTPMKISKSLRLIVRDGDHVEAGQPLTRGAINPHDLLLYKDTDAAQRYLV
EEVQRVYRSQGVKVHDKHIEVIVRQMLRYVEITDGGDTDLLEGQTVERWEVDQANDALPEGKTPASWKPVLLGITKSSLT
TKSWLSAASFQHTTHVLTEASMRGQVDELIGLKENVILGKLIPAGTGLTTVREMQVADERTLEKYGQTSVSTDAVTGSQR
YDDTRPSSTSINPSYGD

Sequences:

>Translated_1537_residues
MKDFSKVRIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACGKYKRQRYEGKVCERCGVEVT
SSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAAQLEKVLYFSSFLVTDPRNAQKDGRPLRRGELLSDDEYREL
RFGRQETYTLPSGTEAAVRDGEYVTRGQVLGGNVVSKMDGLAQYRFPRRAEIAYAEEAEASLPLPSDVLVQQDSFRPGEI
LAELEGDVQITAPVDGTAFLLDMGEDSVLVELRDSAAEDAAQGEVLARVYIPHGMNVQVAEGEVVEAGSVLATAAAGDRL
RVSRDSRLSNVNFPKKKGDVKVTAHWTRRVEYRIEPQMHVLVGDGSEVRKGQKVVGAIDKEEEVIAEADGVITLHAPASI
IVSKARVYAYQDEPLVVNGDRVEPGDELADSGNLRSEISGRVEIDLVRKQVRVIESYDFEAKMGAEAVKELLDDLDLDQL
EAELSEQMKDNSRHKRAKARKRLEVVRAFKRSGNHPSWMILETVPVMPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNR
LKKLIGQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVV
GPQLKLHQCGVPKRMALELFKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLGI
QAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSAHNLLSPANGEPNVKPSRDIILGIFTLT
QLRKDNLGAGSEFANEQDALKALDEGRVALNTPIRVNGVETSPGRLKYVFSSPDEAIMAVDRGEIDYQDHVRIRLNGTVY
ETSAGRVMFRRLVQEALGAQGHLVDTLVNLDTAYEKDSLKDMVMACYKELGIEATAGLLDALKDSGFKLSTISGITIGID
DIVLPPNKRELLAEADEKLAAIEQNYEFGFMTDEERYKQVVQLWNDTTDEVKNAVFENFSRNYPFNPLWIMSQSGARGNP
QQIRQLAGMRGLMARPDGSTIEVPIRASFREGLTVLEYFISTHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDC
GTTDYTVMPLGTTDERTGEWRTRKGSEIETAIYGRTLTADVELSDGRVIPAGQMLSLEDVKAITRDAKAIGEVFVRTPLN
CRVRAGVCQKCYGYDLSQAKPVSLGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGGDITMGLPRVIELFEARKPKTQAV
VADRDGVVRIEEEEERYLVRIEAEDEAFSSKTPMKISKSLRLIVRDGDHVEAGQPLTRGAINPHDLLLYKDTDAAQRYLV
EEVQRVYRSQGVKVHDKHIEVIVRQMLRYVEITDGGDTDLLEGQTVERWEVDQANDALPEGKTPASWKPVLLGITKSSLT
TKSWLSAASFQHTTHVLTEASMRGQVDELIGLKENVILGKLIPAGTGLTTVREMQVADERTLEKYGQTSVSTDAVTGSQR
YDDTRPSSTSINPSYGD
>Mature_1537_residues
MKDFSKVRIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACGKYKRQRYEGKVCERCGVEVT
SSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAAQLEKVLYFSSFLVTDPRNAQKDGRPLRRGELLSDDEYREL
RFGRQETYTLPSGTEAAVRDGEYVTRGQVLGGNVVSKMDGLAQYRFPRRAEIAYAEEAEASLPLPSDVLVQQDSFRPGEI
LAELEGDVQITAPVDGTAFLLDMGEDSVLVELRDSAAEDAAQGEVLARVYIPHGMNVQVAEGEVVEAGSVLATAAAGDRL
RVSRDSRLSNVNFPKKKGDVKVTAHWTRRVEYRIEPQMHVLVGDGSEVRKGQKVVGAIDKEEEVIAEADGVITLHAPASI
IVSKARVYAYQDEPLVVNGDRVEPGDELADSGNLRSEISGRVEIDLVRKQVRVIESYDFEAKMGAEAVKELLDDLDLDQL
EAELSEQMKDNSRHKRAKARKRLEVVRAFKRSGNHPSWMILETVPVMPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNR
LKKLIGQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVV
GPQLKLHQCGVPKRMALELFKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLGI
QAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSAHNLLSPANGEPNVKPSRDIILGIFTLT
QLRKDNLGAGSEFANEQDALKALDEGRVALNTPIRVNGVETSPGRLKYVFSSPDEAIMAVDRGEIDYQDHVRIRLNGTVY
ETSAGRVMFRRLVQEALGAQGHLVDTLVNLDTAYEKDSLKDMVMACYKELGIEATAGLLDALKDSGFKLSTISGITIGID
DIVLPPNKRELLAEADEKLAAIEQNYEFGFMTDEERYKQVVQLWNDTTDEVKNAVFENFSRNYPFNPLWIMSQSGARGNP
QQIRQLAGMRGLMARPDGSTIEVPIRASFREGLTVLEYFISTHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDC
GTTDYTVMPLGTTDERTGEWRTRKGSEIETAIYGRTLTADVELSDGRVIPAGQMLSLEDVKAITRDAKAIGEVFVRTPLN
CRVRAGVCQKCYGYDLSQAKPVSLGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGGDITMGLPRVIELFEARKPKTQAV
VADRDGVVRIEEEEERYLVRIEAEDEAFSSKTPMKISKSLRLIVRDGDHVEAGQPLTRGAINPHDLLLYKDTDAAQRYLV
EEVQRVYRSQGVKVHDKHIEVIVRQMLRYVEITDGGDTDLLEGQTVERWEVDQANDALPEGKTPASWKPVLLGITKSSLT
TKSWLSAASFQHTTHVLTEASMRGQVDELIGLKENVILGKLIPAGTGLTTVREMQVADERTLEKYGQTSVSTDAVTGSQR
YDDTRPSSTSINPSYGD

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG0086

COG function: function code K; DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase beta' chain family

Homologues:

Organism=Homo sapiens, GI4505939, Length=665, Percent_Identity=25.2631578947368, Blast_Score=165, Evalue=4e-40,
Organism=Homo sapiens, GI39725938, Length=310, Percent_Identity=33.8709677419355, Blast_Score=143, Evalue=2e-33,
Organism=Homo sapiens, GI103471997, Length=613, Percent_Identity=25.9380097879282, Blast_Score=132, Evalue=2e-30,
Organism=Escherichia coli, GI2367335, Length=940, Percent_Identity=44.8936170212766, Blast_Score=756, Evalue=0.0,
Organism=Caenorhabditis elegans, GI25145495, Length=698, Percent_Identity=27.7936962750716, Blast_Score=181, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI71987878, Length=667, Percent_Identity=25.4872563718141, Blast_Score=158, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6320061, Length=695, Percent_Identity=25.7553956834532, Blast_Score=154, Evalue=1e-37,
Organism=Saccharomyces cerevisiae, GI6324690, Length=656, Percent_Identity=25.4573170731707, Blast_Score=149, Evalue=3e-36,
Organism=Drosophila melanogaster, GI17530899, Length=670, Percent_Identity=24.3283582089552, Blast_Score=166, Evalue=9e-41,
Organism=Drosophila melanogaster, GI281360912, Length=318, Percent_Identity=31.4465408805031, Blast_Score=140, Evalue=5e-33,
Organism=Drosophila melanogaster, GI17647875, Length=727, Percent_Identity=23.5213204951857, Blast_Score=122, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOC_DEIGD (Q1J0P7)

Other databases:

- EMBL:   CP000359
- RefSeq:   YP_604106.1
- ProteinModelPortal:   Q1J0P7
- SMR:   Q1J0P7
- STRING:   Q1J0P7
- GeneID:   4057600
- GenomeReviews:   CP000359_GR
- KEGG:   dge:Dgeo_0635
- NMPDR:   fig|68909.1.peg.938
- eggNOG:   COG0086
- HOGENOM:   HBG621785
- OMA:   FEARVPK
- ProtClustDB:   PRK00566
- BioCyc:   DGEO319795:DGEO_0635-MONOMER
- HAMAP:   MF_01322
- InterPro:   IPR000722
- InterPro:   IPR006592
- InterPro:   IPR007080
- InterPro:   IPR007066
- InterPro:   IPR007083
- InterPro:   IPR007081
- InterPro:   IPR012754
- SMART:   SM00663
- TIGRFAMs:   TIGR02386

Pfam domain/function: PF04997 RNA_pol_Rpb1_1; PF00623 RNA_pol_Rpb1_2; PF04983 RNA_pol_Rpb1_3; PF05000 RNA_pol_Rpb1_4; PF04998 RNA_pol_Rpb1_5

EC number: =2.7.7.6

Molecular weight: Translated: 170605; Mature: 170605

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDFSKVRIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACG
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCHHHHCCCCCCCHHHHH
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAA
HHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCEEECCCCEEEEEEECCHHHHHHHHHCCHH
QLEKVLYFSSFLVTDPRNAQKDGRPLRRGELLSDDEYRELRFGRQETYTLPSGTEAAVRD
HHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCHHHHCC
GEYVTRGQVLGGNVVSKMDGLAQYRFPRRAEIAYAEEAEASLPLPSDVLVQQDSFRPGEI
CCEEECCEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHEECCCCCHHHH
LAELEGDVQITAPVDGTAFLLDMGEDSVLVELRDSAAEDAAQGEVLARVYIPHGMNVQVA
HHCCCCCEEEEECCCCCEEEEECCCCEEEEEECHHHHHHHHCCCEEEEEECCCCCEEEEC
EGEVVEAGSVLATAAAGDRLRVSRDSRLSNVNFPKKKGDVKVTAHWTRRVEYRIEPQMHV
CCCEEECCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCEEEE
LVGDGSEVRKGQKVVGAIDKEEEVIAEADGVITLHAPASIIVSKARVYAYQDEPLVVNGD
EECCCHHHHCCCHHHCCCCCHHHHHHHCCCEEEEECCHHHHEEHHEEEEECCCCEEEECC
RVEPGDELADSGNLRSEISGRVEIDLVRKQVRVIESYDFEAKMGAEAVKELLDDLDLDQL
CCCCCHHHHCCCCCHHHCCCCEEHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCHHHH
EAELSEQMKDNSRHKRAKARKRLEVVRAFKRSGNHPSWMILETVPVMPPDLRPMVQVDGG
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEECCC
RFATSDLNDLYRRLINRNNRLKKLIGQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVTN
EEECCCHHHHHHHHHCCCHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCC
PGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGVPKRMALELF
CCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEECCCEEEHHCCCCHHHHHHHH
KPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLGI
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCH
QAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSAHNLLSPA
HHCCCEEECCCCEEEEHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC
NGEPNVKPSRDIILGIFTLTQLRKDNLGAGSEFANEQDALKALDEGRVALNTPIRVNGVE
CCCCCCCCCHHHEEHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHCCCEEEECCEEEECEE
TSPGRLKYVFSSPDEAIMAVDRGEIDYQDHVRIRLNGTVYETSAGRVMFRRLVQEALGAQ
CCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHCCC
GHLVDTLVNLDTAYEKDSLKDMVMACYKELGIEATAGLLDALKDSGFKLSTISGITIGID
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCEEECCC
DIVLPPNKRELLAEADEKLAAIEQNYEFGFMTDEERYKQVVQLWNDTTDEVKNAVFENFS
CEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHC
RNYPFNPLWIMSQSGARGNPQQIRQLAGMRGLMARPDGSTIEVPIRASFREGLTVLEYFI
CCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCEEEEEECCCHHHHHHHHHHHH
STHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYTVMPLGTTDERTGEW
HHCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCCCCCCC
RTRKGSEIETAIYGRTLTADVELSDGRVIPAGQMLSLEDVKAITRDAKAIGEVFVRTPLN
CCCCCCCCCCEEECCEEEEEEEECCCEEECCCCEECHHHHHHHHHHHHHHHHHHHCCCCC
CRVRAGVCQKCYGYDLSQAKPVSLGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGGDIT
CEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEE
MGLPRVIELFEARKPKTQAVVADRDGVVRIEEEEERYLVRIEAEDEAFSSKTPMKISKSL
CCHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCHHHCCCE
RLIVRDGDHVEAGQPLTRGAINPHDLLLYKDTDAAQRYLVEEVQRVYRSQGVKVHDKHIE
EEEEECCCCCCCCCCHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHH
VIVRQMLRYVEITDGGDTDLLEGQTVERWEVDQANDALPEGKTPASWKPVLLGITKSSLT
HHHHHHHHHEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCH
TKSWLSAASFQHTTHVLTEASMRGQVDELIGLKENVILGKLIPAGTGLTTVREMQVADER
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
TLEKYGQTSVSTDAVTGSQRYDDTRPSSTSINPSYGD
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKDFSKVRIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACG
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCHHHHCCCCCCCHHHHH
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAA
HHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCEEECCCCEEEEEEECCHHHHHHHHHCCHH
QLEKVLYFSSFLVTDPRNAQKDGRPLRRGELLSDDEYRELRFGRQETYTLPSGTEAAVRD
HHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCHHHHCC
GEYVTRGQVLGGNVVSKMDGLAQYRFPRRAEIAYAEEAEASLPLPSDVLVQQDSFRPGEI
CCEEECCEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHEECCCCCHHHH
LAELEGDVQITAPVDGTAFLLDMGEDSVLVELRDSAAEDAAQGEVLARVYIPHGMNVQVA
HHCCCCCEEEEECCCCCEEEEECCCCEEEEEECHHHHHHHHCCCEEEEEECCCCCEEEEC
EGEVVEAGSVLATAAAGDRLRVSRDSRLSNVNFPKKKGDVKVTAHWTRRVEYRIEPQMHV
CCCEEECCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCEEEE
LVGDGSEVRKGQKVVGAIDKEEEVIAEADGVITLHAPASIIVSKARVYAYQDEPLVVNGD
EECCCHHHHCCCHHHCCCCCHHHHHHHCCCEEEEECCHHHHEEHHEEEEECCCCEEEECC
RVEPGDELADSGNLRSEISGRVEIDLVRKQVRVIESYDFEAKMGAEAVKELLDDLDLDQL
CCCCCHHHHCCCCCHHHCCCCEEHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCHHHH
EAELSEQMKDNSRHKRAKARKRLEVVRAFKRSGNHPSWMILETVPVMPPDLRPMVQVDGG
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEECCC
RFATSDLNDLYRRLINRNNRLKKLIGQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVTN
EEECCCHHHHHHHHHCCCHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCC
PGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGVPKRMALELF
CCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEECCCEEEHHCCCCHHHHHHHH
KPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLGI
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCH
QAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSAHNLLSPA
HHCCCEEECCCCEEEEHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC
NGEPNVKPSRDIILGIFTLTQLRKDNLGAGSEFANEQDALKALDEGRVALNTPIRVNGVE
CCCCCCCCCHHHEEHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHCCCEEEECCEEEECEE
TSPGRLKYVFSSPDEAIMAVDRGEIDYQDHVRIRLNGTVYETSAGRVMFRRLVQEALGAQ
CCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHCCC
GHLVDTLVNLDTAYEKDSLKDMVMACYKELGIEATAGLLDALKDSGFKLSTISGITIGID
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCEEECCC
DIVLPPNKRELLAEADEKLAAIEQNYEFGFMTDEERYKQVVQLWNDTTDEVKNAVFENFS
CEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHC
RNYPFNPLWIMSQSGARGNPQQIRQLAGMRGLMARPDGSTIEVPIRASFREGLTVLEYFI
CCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCEEEEEECCCHHHHHHHHHHHH
STHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYTVMPLGTTDERTGEW
HHCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCCCCCCC
RTRKGSEIETAIYGRTLTADVELSDGRVIPAGQMLSLEDVKAITRDAKAIGEVFVRTPLN
CCCCCCCCCCEEECCEEEEEEEECCCEEECCCCEECHHHHHHHHHHHHHHHHHHHCCCCC
CRVRAGVCQKCYGYDLSQAKPVSLGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGGDIT
CEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEE
MGLPRVIELFEARKPKTQAVVADRDGVVRIEEEEERYLVRIEAEDEAFSSKTPMKISKSL
CCHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCHHHCCCE
RLIVRDGDHVEAGQPLTRGAINPHDLLLYKDTDAAQRYLVEEVQRVYRSQGVKVHDKHIE
EEEEECCCCCCCCCCHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHH
VIVRQMLRYVEITDGGDTDLLEGQTVERWEVDQANDALPEGKTPASWKPVLLGITKSSLT
HHHHHHHHHEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCH
TKSWLSAASFQHTTHVLTEASMRGQVDELIGLKENVILGKLIPAGTGLTTVREMQVADER
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
TLEKYGQTSVSTDAVTGSQRYDDTRPSSTSINPSYGD
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA