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The map label for this gene is rpmB

Identifier: 94984642

GI number: 94984642

Start: 561080

End: 561334

Strand: Reverse

Name: rpmB

Synonym: Dgeo_0535

Alternate gene names: 94984642

Gene position: 561334-561080 (Counterclockwise)

Preceding gene: 94984643

Following gene: 94984641

Centisome position: 22.75

GC content: 62.35

Gene sequence:

>255_bases
ATGAGCCATCAATGCTACTTGACCGGAAAGAAGACGATGGTGGTGAACGCGGTGATCCGCCGCGGGAAGGCCCGCCGTGA
GGGTGGCGTGGGCCGCAAGACCACCGGCATCACCAAGCGCGTGCAGAAAGCCAACCTGCACAAAAAGCTCATCCGCGAAA
ACGGCGTGCTGAAGCGGGTATGGCTGAGCGCCGCGGCGCTGCGTACACTGAATAAAGGCCCCTACCAGGGCGTGGAGCTC
GCATGCAGGTGCTGA

Upstream 100 bases:

>100_bases
GGACAGTGCACTGGCCTAACCGGTGCCCTGGCCGCCAACGTACGCCAGCAGCCCCCACGGGACACTTCACCTGTTTTGGA
GATGATAAGGATAAATCAGT

Downstream 100 bases:

>100_bases
TGCGGCCCTTGGGGATTGTAACGGTGGCCCTCGCTGGCAGCCTCTGCAGTCTCACCTCAGCGCAGGCGGCTCCTCTACAG
CTCAGCGCGACCACCAGCAT

Product: 50S ribosomal protein L28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 83

Protein sequence:

>84_residues
MSHQCYLTGKKTMVVNAVIRRGKARREGGVGRKTTGITKRVQKANLHKKLIRENGVLKRVWLSAAALRTLNKGPYQGVEL
ACRC

Sequences:

>Translated_84_residues
MSHQCYLTGKKTMVVNAVIRRGKARREGGVGRKTTGITKRVQKANLHKKLIRENGVLKRVWLSAAALRTLNKGPYQGVEL
ACRC
>Mature_83_residues
SHQCYLTGKKTMVVNAVIRRGKARREGGVGRKTTGITKRVQKANLHKKLIRENGVLKRVWLSAAALRTLNKGPYQGVELA
CRC

Specific function: Unknown

COG id: COG0227

COG function: function code J; Ribosomal protein L28

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L28P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL28_DEIGD (Q1J0Z7)

Other databases:

- EMBL:   CP000359
- RefSeq:   YP_604006.1
- ProteinModelPortal:   Q1J0Z7
- SMR:   Q1J0Z7
- STRING:   Q1J0Z7
- GeneID:   4057771
- GenomeReviews:   CP000359_GR
- KEGG:   dge:Dgeo_0535
- NMPDR:   fig|68909.1.peg.836
- eggNOG:   COG0227
- HOGENOM:   HBG597003
- OMA:   CYLTGKK
- ProtClustDB:   PRK00359
- BioCyc:   DGEO319795:DGEO_0535-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00373
- InterPro:   IPR001383
- TIGRFAMs:   TIGR00009

Pfam domain/function: PF00830 Ribosomal_L28

EC number: NA

Molecular weight: Translated: 9375; Mature: 9244

Theoretical pI: Translated: 11.85; Mature: 11.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHQCYLTGKKTMVVNAVIRRGKARREGGVGRKTTGITKRVQKANLHKKLIRENGVLKRV
CCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
WLSAAALRTLNKGPYQGVELACRC
HHHHHHHHHHCCCCCCCCEEEECC
>Mature Secondary Structure 
SHQCYLTGKKTMVVNAVIRRGKARREGGVGRKTTGITKRVQKANLHKKLIRENGVLKRV
CCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
WLSAAALRTLNKGPYQGVELACRC
HHHHHHHHHHCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA