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The map label for this gene is xynB [H]

Identifier: 94972190

GI number: 94972190

Start: 304487

End: 305524

Strand: Direct

Name: xynB [H]

Synonym: Dgeo_2723

Alternate gene names: 94972190

Gene position: 304487-305524 (Clockwise)

Preceding gene: 94972191

Following gene: 94972189

Centisome position: 53.03

GC content: 66.28

Gene sequence:

>1038_bases
ATGACAAAAGCCTTTCTCGCGCTGCCCCATCTGGCCCTGGCCTGCGTCCTTATGTCGCTGCTCACGCCCTCTGCCAGCCT
GGCCGGCGGAAGCAGCCCCGCCGCCACGCGGCCCGCTCCCTCTACAGCCACCTTCCGCAATCCGGTCATCGACGAGAATT
TCCCCGACCCCTTCATCCTGAAAGTGGGCCATACCTACCACGCCTACTCGACGAACAGCGGCAACGACAACGTCCCACAC
GCCATCAGCCGCGATCTGCGCCACTGGGAACGGGCGGGGGACGCCCTGCCGGTGCTGCCGGGGTGGGCCAAGGCTGGGCG
GACCTGGGCGCCGGAGGTGGCGCACATCGGCAACCGCTTTGTCCTGTACTTCACGGCGACGGACCAGGCGAGTGGGCGCC
AGTGCATCGGGGCAGGGGTGGCGAGTTCTCCCACCGGGCCATTCCGAGACACCGCCAGCCGCCCGCTCGTCTGTCAGGAG
GCCGAGGGCGGAAGCATTGACCCCAGCCCCTTTCAGGATGTGGACGGCCAGTGGTACCTGCTGTGGAAAAACGACGGCAA
CTGCTGCAACCAGCTCACCAACATCTATCTGCAACCGCTCGGGGCGGATGGCTTGAAGCTCACCGGCCAAGCGACCCCAC
TGATTCACAATTTCGAGCTCTGGGAAGGCAATGTGATTGAGGCACCGACCCTTTACCGTTCGGGCGGCGTGTACTACCTG
CTGTACTCGGGCGGCCCCTATGACAGTGACCTGTACGCGGTGGGCTACGCGACGTCCAATCGAATCACCGGCCCGTACCG
CAAAGCCCCCGAAAACCCCATTCTGGTCAGCAAGGGTGCGGTGGCCGGACCTGGGCATCAGGCGGTCGTGCAGGACGGCG
TGGGGAAAACCTGGCTGGCCTACCACGCCTGGACCGCCGGGCGCATTGGGGACGCGGTGGGCTACCGCAGCCTGCGGCTG
GACCCCGTGACCTTTGCGGGCGGCAAAGTGAAGGTGGCGGGACCGACCCTCACGCCACAGCAGGCGCCGACGCCTTGA

Upstream 100 bases:

>100_bases
CAGCCACCACGCTAGCGGCCGTTCCGGCCCTGATCGCGTATCTGGTCGCGCAGCGCTTTCTCGAAGCGGGCCTCTCCACC
ACAGGCCTCAAGGAATGAGC

Downstream 100 bases:

>100_bases
ATCTCGCTTCCCCTTCAAGGGCTGTAGAAAGGGCTTTCCGATGACCGATCTTCGGCATTCCGGCCCCCTCCTCCCCCAGG
CACCGCTCTCCCCCGGCAAT

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MTKAFLALPHLALACVLMSLLTPSASLAGGSSPAATRPAPSTATFRNPVIDENFPDPFILKVGHTYHAYSTNSGNDNVPH
AISRDLRHWERAGDALPVLPGWAKAGRTWAPEVAHIGNRFVLYFTATDQASGRQCIGAGVASSPTGPFRDTASRPLVCQE
AEGGSIDPSPFQDVDGQWYLLWKNDGNCCNQLTNIYLQPLGADGLKLTGQATPLIHNFELWEGNVIEAPTLYRSGGVYYL
LYSGGPYDSDLYAVGYATSNRITGPYRKAPENPILVSKGAVAGPGHQAVVQDGVGKTWLAYHAWTAGRIGDAVGYRSLRL
DPVTFAGGKVKVAGPTLTPQQAPTP

Sequences:

>Translated_345_residues
MTKAFLALPHLALACVLMSLLTPSASLAGGSSPAATRPAPSTATFRNPVIDENFPDPFILKVGHTYHAYSTNSGNDNVPH
AISRDLRHWERAGDALPVLPGWAKAGRTWAPEVAHIGNRFVLYFTATDQASGRQCIGAGVASSPTGPFRDTASRPLVCQE
AEGGSIDPSPFQDVDGQWYLLWKNDGNCCNQLTNIYLQPLGADGLKLTGQATPLIHNFELWEGNVIEAPTLYRSGGVYYL
LYSGGPYDSDLYAVGYATSNRITGPYRKAPENPILVSKGAVAGPGHQAVVQDGVGKTWLAYHAWTAGRIGDAVGYRSLRL
DPVTFAGGKVKVAGPTLTPQQAPTP
>Mature_344_residues
TKAFLALPHLALACVLMSLLTPSASLAGGSSPAATRPAPSTATFRNPVIDENFPDPFILKVGHTYHAYSTNSGNDNVPHA
ISRDLRHWERAGDALPVLPGWAKAGRTWAPEVAHIGNRFVLYFTATDQASGRQCIGAGVASSPTGPFRDTASRPLVCQEA
EGGSIDPSPFQDVDGQWYLLWKNDGNCCNQLTNIYLQPLGADGLKLTGQATPLIHNFELWEGNVIEAPTLYRSGGVYYLL
YSGGPYDSDLYAVGYATSNRITGPYRKAPENPILVSKGAVAGPGHQAVVQDGVGKTWLAYHAWTAGRIGDAVGYRSLRLD
PVTFAGGKVKVAGPTLTPQQAPTP

Specific function: Beta-xylosidase is an intracellular xylan-degrading enzyme [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=272, Percent_Identity=27.2058823529412, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 36757; Mature: 36625

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKAFLALPHLALACVLMSLLTPSASLAGGSSPAATRPAPSTATFRNPVIDENFPDPFIL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
KVGHTYHAYSTNSGNDNVPHAISRDLRHWERAGDALPVLPGWAKAGRTWAPEVAHIGNRF
EECCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHCCCEE
VLYFTATDQASGRQCIGAGVASSPTGPFRDTASRPLVCQEAEGGSIDPSPFQDVDGQWYL
EEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEE
LWKNDGNCCNQLTNIYLQPLGADGLKLTGQATPLIHNFELWEGNVIEAPTLYRSGGVYYL
EECCCCHHHHHHHHHEEEECCCCCEEEECCCCCEEEEEEECCCCEECCCEEEECCCEEEE
LYSGGPYDSDLYAVGYATSNRITGPYRKAPENPILVSKGAVAGPGHQAVVQDGVGKTWLA
EECCCCCCCCEEEEEEECCCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHCCCCCEEEE
YHAWTAGRIGDAVGYRSLRLDPVTFAGGKVKVAGPTLTPQQAPTP
EECCCCCCHHHHHCCCEEEECCEEECCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
TKAFLALPHLALACVLMSLLTPSASLAGGSSPAATRPAPSTATFRNPVIDENFPDPFIL
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
KVGHTYHAYSTNSGNDNVPHAISRDLRHWERAGDALPVLPGWAKAGRTWAPEVAHIGNRF
EECCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHCCCEE
VLYFTATDQASGRQCIGAGVASSPTGPFRDTASRPLVCQEAEGGSIDPSPFQDVDGQWYL
EEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEE
LWKNDGNCCNQLTNIYLQPLGADGLKLTGQATPLIHNFELWEGNVIEAPTLYRSGGVYYL
EECCCCHHHHHHHHHEEEECCCCCEEEECCCCCEEEEEEECCCCEECCCEEEECCCEEEE
LYSGGPYDSDLYAVGYATSNRITGPYRKAPENPILVSKGAVAGPGHQAVVQDGVGKTWLA
EECCCCCCCCEEEEEEECCCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHCCCCCEEEE
YHAWTAGRIGDAVGYRSLRLDPVTFAGGKVKVAGPTLTPQQAPTP
EECCCCCCHHHHHCCCEEEECCEEECCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2440680; 1765080 [H]