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The map label for this gene is abnA [H]

Identifier: 94972189

GI number: 94972189

Start: 305565

End: 306497

Strand: Direct

Name: abnA [H]

Synonym: Dgeo_2722

Alternate gene names: 94972189

Gene position: 305565-306497 (Clockwise)

Preceding gene: 94972190

Following gene: 94972188

Centisome position: 53.22

GC content: 66.77

Gene sequence:

>933_bases
ATGACCGATCTTCGGCATTCCGGCCCCCTCCTCCCCCAGGCACCGCTCTCCCCCGGCAATTTTGCGGACCCCTTCGTGCT
GCTGGTCGACGGCAGCTATTACGCCTACGGCACGGGCCTCAACGGACAGGCAGGGCAACGGGCCTTCGAAGTCCTGTCCT
CACCTGACCTCGTCCACTGGACCTCGCACGGGGGTGTGCTGGAGCCGGTCCACCCGGAGCCGCGCGACTACTGGGCGCCG
GAGGTGGCGCAGACAAACGGAACGTTCTACCTGTACTACTCGGTCGGGCAGGCGGATAAACACCACCACCTGCGCGTGGC
GACCGCGGAGCAGCCGCTCGGTCCCTTCCGTGATCTGGGACGAAACCTCACGCCGGACGAACCTTTCGCCATCGATCCAC
ACCCCTTTCAGGCGCCCGACGGGTCGTGGTGGCTCTTCTACGCGCGCGACGACCTGACCAGCGAGCGACCAGGGACTGTG
CTGGCCGTGGCAGAGCTGCGCGACATGACCCAGCTGGGCGAGACACGCACCATTCTGCGCGCGAGTGGCGACTGGCAGAT
GTACCAGCGGGGCCGCCCCATGTACGGCGGGGTTTACGACTGGCACACGCTGGAAGGGCCCTTCGTGCTGCACCGAGACG
GGCGCTTTCACCTGCTGTATTCGGGGGGTGCCTGGACGAACGAAACGTATGGGGTGGGCTACGCCGTCGCGGATCACCCA
CTGGGGCCCTGGACCGAACCCGTTCCCGGCGCGAACGTGCTGCGCAGCACCGGGCATCTGCGCGACCCCGGTCACGCCAG
CGTCACAACGCTGGATGGGGAGGACATCCTGGTCTTTCACGCCTGGAACGAGGAATATACCAAACGCCAACTCCACGCCG
CGCCGCTGCGCTGGGTGAATGGCCTTCCCACCGCACTGCCCGCACCGGTCTAA

Upstream 100 bases:

>100_bases
GGCGGCAAAGTGAAGGTGGCGGGACCGACCCTCACGCCACAGCAGGCGCCGACGCCTTGAATCTCGCTTCCCCTTCAAGG
GCTGTAGAAAGGGCTTTCCG

Downstream 100 bases:

>100_bases
AGCCCTCCCAGAGCACAAGCAAATAGCCCGCTCCTATCTAGGGGTCAAAACTCAGATGGAGACTTGAGAAGTCGGCTCCT
GTACGGTGTTTTCTGCGATG

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTDLRHSGPLLPQAPLSPGNFADPFVLLVDGSYYAYGTGLNGQAGQRAFEVLSSPDLVHWTSHGGVLEPVHPEPRDYWAP
EVAQTNGTFYLYYSVGQADKHHHLRVATAEQPLGPFRDLGRNLTPDEPFAIDPHPFQAPDGSWWLFYARDDLTSERPGTV
LAVAELRDMTQLGETRTILRASGDWQMYQRGRPMYGGVYDWHTLEGPFVLHRDGRFHLLYSGGAWTNETYGVGYAVADHP
LGPWTEPVPGANVLRSTGHLRDPGHASVTTLDGEDILVFHAWNEEYTKRQLHAAPLRWVNGLPTALPAPV

Sequences:

>Translated_310_residues
MTDLRHSGPLLPQAPLSPGNFADPFVLLVDGSYYAYGTGLNGQAGQRAFEVLSSPDLVHWTSHGGVLEPVHPEPRDYWAP
EVAQTNGTFYLYYSVGQADKHHHLRVATAEQPLGPFRDLGRNLTPDEPFAIDPHPFQAPDGSWWLFYARDDLTSERPGTV
LAVAELRDMTQLGETRTILRASGDWQMYQRGRPMYGGVYDWHTLEGPFVLHRDGRFHLLYSGGAWTNETYGVGYAVADHP
LGPWTEPVPGANVLRSTGHLRDPGHASVTTLDGEDILVFHAWNEEYTKRQLHAAPLRWVNGLPTALPAPV
>Mature_309_residues
TDLRHSGPLLPQAPLSPGNFADPFVLLVDGSYYAYGTGLNGQAGQRAFEVLSSPDLVHWTSHGGVLEPVHPEPRDYWAPE
VAQTNGTFYLYYSVGQADKHHHLRVATAEQPLGPFRDLGRNLTPDEPFAIDPHPFQAPDGSWWLFYARDDLTSERPGTVL
AVAELRDMTQLGETRTILRASGDWQMYQRGRPMYGGVYDWHTLEGPFVLHRDGRFHLLYSGGAWTNETYGVGYAVADHPL
GPWTEPVPGANVLRSTGHLRDPGHASVTTLDGEDILVFHAWNEEYTKRQLHAAPLRWVNGLPTALPAPV

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 34465; Mature: 34334

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLRHSGPLLPQAPLSPGNFADPFVLLVDGSYYAYGTGLNGQAGQRAFEVLSSPDLVHW
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
TSHGGVLEPVHPEPRDYWAPEVAQTNGTFYLYYSVGQADKHHHLRVATAEQPLGPFRDLG
ECCCCEECCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHC
RNLTPDEPFAIDPHPFQAPDGSWWLFYARDDLTSERPGTVLAVAELRDMTQLGETRTILR
CCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHCCCEEEEE
ASGDWQMYQRGRPMYGGVYDWHTLEGPFVLHRDGRFHLLYSGGAWTNETYGVGYAVADHP
ECCCHHHHHCCCCCCCCEEECEECCCCEEEEECCEEEEEECCCCCCCCCCCCEEEEECCC
LGPWTEPVPGANVLRSTGHLRDPGHASVTTLDGEDILVFHAWNEEYTKRQLHAAPLRWVN
CCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHC
GLPTALPAPV
CCCCCCCCCC
>Mature Secondary Structure 
TDLRHSGPLLPQAPLSPGNFADPFVLLVDGSYYAYGTGLNGQAGQRAFEVLSSPDLVHW
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
TSHGGVLEPVHPEPRDYWAPEVAQTNGTFYLYYSVGQADKHHHLRVATAEQPLGPFRDLG
ECCCCEECCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHC
RNLTPDEPFAIDPHPFQAPDGSWWLFYARDDLTSERPGTVLAVAELRDMTQLGETRTILR
CCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHCCCEEEEE
ASGDWQMYQRGRPMYGGVYDWHTLEGPFVLHRDGRFHLLYSGGAWTNETYGVGYAVADHP
ECCCHHHHHCCCCCCCCEEECEECCCCEEEEECCEEEEEECCCCCCCCCCCCEEEEECCC
LGPWTEPVPGANVLRSTGHLRDPGHASVTTLDGEDILVFHAWNEEYTKRQLHAAPLRWVN
CCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHC
GLPTALPAPV
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]